PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031172
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 603aa    MW: 67150.1 Da    PI: 6.0022
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031172genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3351.4e-1022045931374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn........sseelaalklfsevsPi 90 
                  lv+lLl+cAeav  +d++la++lL+++   ++p gd++qR+ ++f+ +L++rl+   +++    +  +    n         +++l a++l+++++P+
  Lus10031172 204 LVHLLLACAEAVGCRDTHLAESLLNQIWSSVNPWGDSLQRVSHCFAMGLKSRLSLLLNNVNPNGTFANGGAANdvsssistGEQRLEAFHLLHQTTPY 301
                  68**************************************************9986555544333222222223345566688999999********* PP

         GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.....skeeleetgerLakfAeelgvp.fefnvl 181
                  + f++++aN+aI++a+ g++ +HiiD++ ++ lQWp+Ll++L+sR++gpp ++RiTg+ +++++      + el++  + La+ A+++g++ fefn++
  Lus10031172 302 IAFGFMAANEAIVQAATGKNYLHIIDLGTEHTLQWPSLLRSLSSRTGGPPaRIRITGLMNKNNNdpisnLALELQSRMKSLAQEARSIGITgFEFNLI 399
                  **********************************************88887*********98888997777889999999**********66****97 PP

         GRAS 182 vak..rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak..l 275
                    +  + + ++ e+L+++pgE+l Vn v+++h++++es  + +   ++L+++k+l P +++vveq+a+hn++ Fl rfle+l+yysa+fdslea   l
  Lus10031172 400 -PDtvSPSLFNSETLDLRPGETLFVNGVMNMHKFVKESRGSLK---AILQAIKKLAPALLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEAIpcL 493
                  .441367899*************************88777666...9*********************************************987668 PP

         GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg..yrveeesgslvlgWkdrpLvsv 370
                   r+s er+k+E + +g+ei+n+va eg++r+erhe++ +Wr++l++aGF++v+++   a+qa++l++ ++ +dg  ++v +e+g ++lgWk+rp++ +
  Lus10031172 494 RRNSAERVKMETRHFGEEIRNIVAYEGSDRVERHERADQWRRQLGRAGFQAVEMK--CASQARMLMSAYGcDDGdgFTVASEKGFMLLGWKGRPILLA 589
                  8999***********************************************9985..7899999999887755444********************** PP

         GRAS 371 SaWr 374
                  SaW+
  Lus10031172 590 SAWQ 593
                  ***6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.954178572IPR005202Transcription factor GRAS
PfamPF035144.7E-100204593IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MESMNNILSF PADDITTLLN SHDLAIRRFC PARLNHQHEP PFCSNFGTTD ITYNQQLMDG  60
ERISASSSSE EIHYINDDNT PYYYHDHNTS AVAAAGIAHS NGRSEVDEFV NGFINADPNN  120
HTGFHLFQDE MEAFDFMFDH HRDHSPSMVM ADDHEMDMIK PSSFQDLLAL PSHEDVRDSD  180
RDHSQDQGQN QRVAAEAVDQ GLNLVHLLLA CAEAVGCRDT HLAESLLNQI WSSVNPWGDS  240
LQRVSHCFAM GLKSRLSLLL NNVNPNGTFA NGGAANDVSS SISTGEQRLE AFHLLHQTTP  300
YIAFGFMAAN EAIVQAATGK NYLHIIDLGT EHTLQWPSLL RSLSSRTGGP PARIRITGLM  360
NKNNNDPISN LALELQSRMK SLAQEARSIG ITGFEFNLIP DTVSPSLFNS ETLDLRPGET  420
LFVNGVMNMH KFVKESRGSL KAILQAIKKL APALLTVVEQ DANHNGPFFL GRFLESLHYY  480
SAIFDSLEAI PCLRRNSAER VKMETRHFGE EIRNIVAYEG SDRVERHERA DQWRRQLGRA  540
GFQAVEMKCA SQARMLMSAY GCDDGDGFTV ASEKGFMLLG WKGRPILLAS AWQVHPHHHH  600
SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-4921159226378Protein SCARECROW
5b3h_A5e-4921159225377Protein SCARECROW
5b3h_D5e-4921159225377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031172
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021639806.10.0DELLA protein RGL1-like
TrEMBLA0A2C9UHF10.0A0A2C9UHF1_MANES; Uncharacterized protein
STRINGLus100311720.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132512730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-75RGA-like 2