PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10031061

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C2H2

Protein Properties

Length: 204aa MW: 22321.3 Da PI: 8.5768

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10031061	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.00011	73	96	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ykC +C k Fs L+ H + H Lus10031061 73 YKCDKCLKKFSFYQALVAHRASqH 96 9******************99888 PP
2	zf-C2H2	11.5	0.00095	137	160	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++Cp C+++F++ L H r+ H Lus10031061 137 FTCPSCSEVFRSGVALGGHKRVvH 160 89**********999999999877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.83E-5	72	95	No hit	No description
Pfam	PF13912	1.4E-5	72	98	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.993	73	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.2	73	96	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	75	96	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.83E-5	132	157	No hit	No description
Pfam	PF13912	5.2E-9	136	160	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.46	137	160	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.138	137	165	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	139	160	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MRSKKQCPEI SSTPSTPTTT MLNNDGNVIL CLVVNVSQDC PEDKGKELVE PAEKAEKKKD 60 EGESSRPIRK GRYKCDKCLK KFSFYQALVA HRASQHKKKD KDQVEIDDAG GGERHVMKKG 120 CRGSGGAQAT QKKKRVFTCP SCSEVFRSGV ALGGHKRVVH SSTPVVTEPI TVVGEEQEKI 180 TSSRRIAIDL NLPPPIDDDD VDE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10031061

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10031061	1e-147	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	3e-11	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Lus10031061