PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031022
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 428aa    MW: 47654.8 Da    PI: 5.5963
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031022genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18531301398
                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +++  lp +f++++    +e++t+tle+e+g+++++k+   +++ +  l++GW++F+ a++L egD++vF+l+g+ +f  +v ++r
  Lus10031022  53 TSLSGLPGPFCRANLP--QEDTTVTLENEDGKEFNIKY--IGYKTG--LSAGWRQFCVAHKLLEGDVLVFQLVGNCKF--KVYIIR 130
                  555679*****99953..3678****************..666655..9*************************9999..888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010198.3E-1351132IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-1955131IPR015300DNA-binding pseudobarrel domain
PfamPF023627.2E-1656131IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-1757131IPR015300DNA-binding pseudobarrel domain
CDDcd100172.34E-2058130No hitNo description
PROSITE profilePS5086312.30858132IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGAAVKREME DGDSSRASPM PHADFKSDGE DDAARFSLSP DTTHANPNTD LATSLSGLPG  60
PFCRANLPQE DTTVTLENED GKEFNIKYIG YKTGLSAGWR QFCVAHKLLE GDVLVFQLVG  120
NCKFKVYIIR AHDLAEVDGA LGLLNLDAHI KPNDAVNNSI GFWMPELMEE KGSVNTVMAI  180
VPSKSAKRNR CRPQSSFIGK KKRKTNKPRS SFQTTGQTTA EQSENDSEEV GSEVLEGFKL  240
SFPGIQFRDI QSFEDFSIVI EGLVIDSELS EAARNKYYKL CCSQNGFLHE DLIKGLNLKL  300
IAGVISETVN IANAIRECSL STSRDEFATW DKTLRASELF GMNVGFLRER LRQLVGLAFD  360
SEDATKSRRY MEARSERLQN EVEIRNLEAK LVELKAAYER SGCDMTSLKS KAERYELKFQ  420
KQVVAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031022
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380709.11e-175B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLU5G8B01e-173U5G8B0_POPTR; Uncharacterized protein
STRINGLus100310220.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-23B3 family protein