PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030723
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 395aa    MW: 43595.5 Da    PI: 6.5518
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030723genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.42e-51251711128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  lppGfrFhPtdeel+++yL+ kv + ++     i+e+d++++ePwdLp ++k +ekewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+   
  Lus10030723  25 LPPGFRFHPTDEELITFYLASKVFHGSFCG-VQIAEIDLNRCEPWDLPDAAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSSsta 121
                  79*************************877.45***************888899****************************************8665 PP

          NAM  96 ...kgel................vglkktLvfykgrapkgektdWvmheyrl 128
                        +                 g+kktLvfykgrap+gekt+Wvmheyrl
  Lus10030723 122 aaaA--AaggggmtwhnnnnkmlLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 171
                  5550..05555556666666777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-5520176IPR003441NAC domain
PROSITE profilePS5100549.57425209IPR003441NAC domain
PfamPF023656.1E-2726171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEEMRQLCEA AAAGEAVEEV NEHGLPPGFR FHPTDEELIT FYLASKVFHG SFCGVQIAEI  60
DLNRCEPWDL PDAAKMGEKE WYFFSLRDRK YPTGLRTNRA TGAGYWKATG KDREVYSSST  120
AAAAAAAGGG GMTWHNNNNK MLLGMKKTLV FYKGRAPRGE KTKWVMHEYR LDGHLSYXXX  180
XXXXXXXXPR SPPPPPPPLL PPPLRIFHKA VEKKNGGMLF QLQGLQELAA LHDYPPNSPP  240
PAGCLPPLLE AAACSSSPWE LLCHHRPNNP PSFLTHNNDD VAAEQDEDDL KTILGQAVSV  300
KKNNNCHVMI APTDVLKHCK KEDANDQQVP GLSWQNYPNP LTSCINVDGH ESEGFHMMLD  360
HAPTSTTTSR SCFGLGGDTW SSLMGNAWPG HPLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-43151717142NO APICAL MERISTEM PROTEIN
1ut4_B4e-43151717142NO APICAL MERISTEM PROTEIN
1ut7_A4e-43151717142NO APICAL MERISTEM PROTEIN
1ut7_B4e-43151717142NO APICAL MERISTEM PROTEIN
3swm_A5e-431517110145NAC domain-containing protein 19
3swm_B5e-431517110145NAC domain-containing protein 19
3swm_C5e-431517110145NAC domain-containing protein 19
3swm_D5e-431517110145NAC domain-containing protein 19
3swp_A5e-431517110145NAC domain-containing protein 19
3swp_B5e-431517110145NAC domain-containing protein 19
3swp_C5e-431517110145NAC domain-containing protein 19
3swp_D5e-431517110145NAC domain-containing protein 19
4dul_A4e-43151717142NAC domain-containing protein 19
4dul_B4e-43151717142NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030723
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300627.23e-94protein CUP-SHAPED COTYLEDON 3
TrEMBLB9GPP56e-93B9GPP5_POPTR; Uncharacterized protein
STRINGLus100307230.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.14e-73NAC family protein