PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10030446

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 276aa MW: 31590.9 Da PI: 9.0391

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10030446	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.8	2.4e-54	24	149	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL+++++++++++ ++i+evdiyk++Pw+Lp+k+ +ekewyfFs+rd+ky++g r+nrat sgyWkatg+dk+++s +++ Lus10030446 24 LPPGFRFHPTDEELIMCYLRNQATSRPCPV-SIIPEVDIYKFDPWQLPEKAGFGEKEWYFFSPRDRKYPNGVRPNRATGSGYWKATGTDKSIYS-GSQ 119 79**************************.89***********99999**************************************.99 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfykg+ pkg ktdW+mheyrl Lus10030446 120 YVGVKKALVFYKGKPPKGIKTDWIMHEYRL 149 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-67	17	176	IPR003441	NAC domain
PROSITE profile	PS51005	60.845	24	176	IPR003441	NAC domain
Pfam	PF02365	7.3E-27	25	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MMMIAGEGTT TRTKNMNMNN DYVLPPGFRF HPTDEELIMC YLRNQATSRP CPVSIIPEVD 60 IYKFDPWQLP EKAGFGEKEW YFFSPRDRKY PNGVRPNRAT GSGYWKATGT DKSIYSGSQY 120 VGVKKALVFY KGKPPKGIKT DWIMHEYRLC DSRTRTVKAS GSMRLDEWVL CRIYKKKPSV 180 SKQYLEQDIN GTEAFKEQQQ QMLKLSKTCS LSDLDSLGPI SQLLDDHSNP NYQTNTGFLV 240 PENTVGSAQN LGQHQVMNDQ QQPFLVNPQM MHQFQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-73	24	182	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-73	24	182	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-73	24	182	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-73	24	182	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-72	24	182	20	174	NAC domain-containing protein 19
3swm_B	1e-72	24	182	20	174	NAC domain-containing protein 19
3swm_C	1e-72	24	182	20	174	NAC domain-containing protein 19
3swm_D	1e-72	24	182	20	174	NAC domain-containing protein 19
3swp_A	1e-72	24	182	20	174	NAC domain-containing protein 19
3swp_B	1e-72	24	182	20	174	NAC domain-containing protein 19
3swp_C	1e-72	24	182	20	174	NAC domain-containing protein 19
3swp_D	1e-72	24	182	20	174	NAC domain-containing protein 19
4dul_A	9e-73	24	182	17	171	NAC domain-containing protein 19
4dul_B	9e-73	24	182	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10030446

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021807478.1	1e-113	NAC transcription factor 29-like
Swissprot	K4BNG7	1e-109	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	M0ZSU1	1e-111	M0ZSU1_SOLTU; Uncharacterized protein
TrEMBL	M5XSI2	1e-111	M5XSI2_PRUPE; Uncharacterized protein
STRING	Lus10030446	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4103	32	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-104	NAC-like, activated by AP3/PI

Link Out ? help Back to Top
Phytozome	Lus10030446

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]