PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10030205 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 432aa MW: 48253.6 Da PI: 6.5606 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.1 | 1e-50 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPt+eel+++yLkkkv+ +k++l +vi++vd++k+ePwd+++k+k +++wyfFs++dkky+tg+r+nrat g+Wkatg+dk ++ Lus10030205 11 VPPGFRFHPTEEELLHYYLKKKVSFEKIDL-DVIRDVDLNKLEPWDIQEKCKIgttPQNDWYFFSHKDKKYPTGTRTNRATIVGFWKATGRDKVIHG- 106 69****************************.9***************964444222455**********************************9999. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+ +g++ktLvfykgrap+g+k+dW+mheyrl Lus10030205 107 SGRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139 9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-55 | 7 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.228 | 11 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-26 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MSISVNGQSQ VPPGFRFHPT EEELLHYYLK KKVSFEKIDL DVIRDVDLNK LEPWDIQEKC 60 KIGTTPQNDW YFFSHKDKKY PTGTRTNRAT IVGFWKATGR DKVIHGSGRR IGMRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD NAAGHKSSSF SVSSSNFLGE SGQEEGWVVC RIFKKKNLQK 180 PVVGPTTAIV NNTTSSIVAF AATNATFIAH TKSAINMFNS CDECELDKII QYVGNSCKEE 240 RYSNSQPLAN DGYHHYNSYK DGRCDFLKLP NLESPNCSPA GYPKMVNKAA FAVENDTNRV 300 SHNKNPVRYP VESMGLTTSW AALDQLVASQ LNGQHEYPVP TAATNVAYCG PSDFYDDHEQ 360 NDGDDDDEVD GPDVPLPPNG IMMNSNNNQP YDDHHQEYNV SNRNEIIDLG SFGARSTTAA 420 SSNGVPYYAT C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-47 | 5 | 177 | 9 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10030205 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021691324.1 | 1e-137 | NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 1e-120 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A314XZA6 | 1e-132 | A0A314XZA6_PRUYE; Uncharacterized protein | ||||
STRING | Lus10030205 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3031 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-124 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10030205 |