PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029777
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 432aa    MW: 49368.1 Da    PI: 6.5482
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029777genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.18.7e-27117213185
     trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                  +Wt++++++Li+a+++++e+  +++           +kk++W++vsk+m+ergf++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d +
  Lus10029777 117 KWTDKMIKLLITAVSYIGEDGASECgsemrrkfvvlQKKGKWKSVSKVMAERGFHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDVI 213
                  7***************99999998777888999999**********************************************569999888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-23115240No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEGNTSQGGI FSGGLPFGGL DLQGSLRIHH QAQHPHAVNH HQGSSAHASI PEGFPLTMGT  60
MHSTDHHSLS MADYKKLDTR KNSLSEDDEP SYTEEGGADG HNESNRGKKG SPWQRVKWTD  120
KMIKLLITAV SYIGEDGASE CGSEMRRKFV VLQKKGKWKS VSKVMAERGF HVSPQQCEDK  180
FNDLNKRYKK LNDMLGRGTS CQVVENPALL DVIDYLSEKE KDDVRKILSS KHLFYEEMCS  240
YHNGNRLHLP HDPALQRSLQ LALRSRDDND NDGMRRLDND DLDEDDPDTD GHDEFEENFA  300
PSRTLGGSSL KRLRQDHVCV AVSSQDVHKA SHSHPTIAPM VDMNQASPES ARQAMGQKQW  360
MEYRTLQLEE QRLQIQVEIL ELEKQRFKWE RFSQKRDHEL EKFRMQNERM KLENERMAFE  420
LKHKEMGADF S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029777
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451284.10.0uncharacterized protein LOC7467820
TrEMBLA0A2K2BEQ00.0A0A2K2BEQ0_POPTR; Uncharacterized protein
STRINGLus100297770.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-159sequence-specific DNA binding transcription factors