PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10029746

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

MYB

Protein Properties

Length: 311aa MW: 35648.1 Da PI: 8.2671

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10029746	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.3e-18	46	91	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+++W++Ia ++ gR++k+c++rw++ Lus10029746 46 RGHWRPAEDEKLRQLVHQYGPHNWNSIADKLK-GRSGKSCRLRWFNQ 91 899**************************9.*********996 PP
2	Myb_DNA-binding	52.8	9.1e-17	98	140	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r ++T+ E+e+l a++ +G++ W++I+r ++ gRt++ +k++w+ Lus10029746 98 RRPFTEKEEERLMAAHRVHGNK-WALISRLFP-GRTDNAVKNHWH 140 679*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.176	41	92	IPR017930	Myb domain
SMART	SM00717	9.6E-15	45	94	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.01E-28	45	139	IPR009057	Homeodomain-like
Pfam	PF00249	1.6E-17	46	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-26	47	99	IPR009057	Homeodomain-like
CDD	cd00167	3.86E-13	49	90	No hit	No description
PROSITE profile	PS51294	24.957	93	147	IPR017930	Myb domain
SMART	SM00717	7.9E-13	97	145	IPR001005	SANT/Myb domain
Pfam	PF00249	6.8E-14	98	140	IPR001005	SANT/Myb domain
CDD	cd00167	3.34E-9	100	140	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.6E-20	100	146	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MAESSADAAI NTSCNERRSD VILTSSYSPS SSSSSYSHYN SSSCLRGHWR PAEDEKLRQL 60 VHQYGPHNWN SIADKLKGRS GKSCRLRWFN QLDPRINRRP FTEKEEERLM AAHRVHGNKW 120 ALISRLFPGR TDNAVKNHWH VITARKHRQH YSKLSASNNN ISTRCNHLPR TSTSSQSHYH 180 LNRAIYGNTH SISISINGNN KNSSNNNNND ATRGCLWSTW PRVVPRFPFG YLKHGIDDDH 240 DDVDDGVREN NKKKVLGDHV HDRHHELLPF SNDDDQIREV EEQGDDEIIR VMYKEEEDAP 300 NFIDFLGVGT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-30	44	146	5	107	B-MYB

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10029746

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10029746	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF230	34	243

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	5e-63	myb domain protein 52

Link Out ? help Back to Top
Phytozome	Lus10029746