PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10029410

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 281aa MW: 32270.9 Da PI: 9.5829

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10029410	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	124.4	9.5e-39	5	157	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk........leleevikevdiykvePwdLpk........kvka.eekewyfFskrdkkyatgkrknratksgy 82 ppGfrF Pt+eel+++yL++k+e+++ l++++vi+ +diy ++PwdLp+ ++++ ee++w+fF + ++++ +g r++r++ gy Lus10029410 5 PPGFRFYPTEEELISFYLHHKLESRDqhhsaeiaLHIDRVIPVLDIYLHNPWDLPQlsadrdtaSLEEgEEQQWFFFRRMKEREGRGGRPKRVAGCGY 102 8********************99977776666666669***********66788877633333667********************** PP NAM 83 Wkatgkdkevlsk......kgel......vglkktLvfykgrapkgektdWvmheyr 127 Wkatg+ v+s+ + + +g k+t+vfykg+ap+g+kt+W +hey+ Lus10029410 103 WKATGSLGYVYSSsssssrS--DhqrrscIGEKRTMVFYKGKAPRGRKTHWKIHEYK 157 ********86665550..0556667*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.07E-39	4	185	IPR003441	NAC domain
PROSITE profile	PS51005	40.968	4	185	IPR003441	NAC domain
Pfam	PF02365	1.9E-20	5	157	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MAPSPPGFRF YPTEEELISF YLHHKLESRD QHHSAEIALH IDRVIPVLDI YLHNPWDLPQ 60 LSADRDTASL EEGEEQQWFF FRRMKEREGR GGRPKRVAGC GYWKATGSLG YVYSSSSSSS 120 RSDHQRRSCI GEKRTMVFYK GKAPRGRKTH WKIHEYKAFI NPQHQQSPSN LTLRHEYSLI 180 RLYKKSRCLR SFDRRPVGIF QLQPNISTST TTTTTSTSTA HSHTNHQLLN ITTTSTPDQQ 240 ADGDDAAATM MPADNHRHPR QPSGFWGYLQ DLDKHFNGDT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-28	5	185	18	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-28	5	185	18	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-28	5	185	18	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-28	5	185	18	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-28	5	185	21	168	NAC domain-containing protein 19
3swm_B	2e-28	5	185	21	168	NAC domain-containing protein 19
3swm_C	2e-28	5	185	21	168	NAC domain-containing protein 19
3swm_D	2e-28	5	185	21	168	NAC domain-containing protein 19
3swp_A	2e-28	5	185	21	168	NAC domain-containing protein 19
3swp_B	2e-28	5	185	21	168	NAC domain-containing protein 19
3swp_C	2e-28	5	185	21	168	NAC domain-containing protein 19
3swp_D	2e-28	5	185	21	168	NAC domain-containing protein 19
4dul_A	2e-28	5	185	18	165	NAC domain-containing protein 19
4dul_B	2e-28	5	185	18	165	NAC domain-containing protein 19

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10029410

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011004197.1	3e-69	PREDICTED: NAC domain-containing protein 90-like
STRING	Lus10029410	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-39	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Lus10029410