PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10029061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | LBD | ||||||||
Protein Properties | Length: 213aa MW: 22976.8 Da PI: 6.5926 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.3 | 4.6e-37 | 29 | 129 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +CaaCk+lrr+Ca++ C+++pyf +p+kfa+vhk+FGasnv+k+l+++ e++r da++slvyeA +r+rdPv+G++g i+ lq+q+++l++el +l Lus10029061 29 PCAACKLLRRRCAAQeCPFSPYFSPLEPHKFAYVHKVFGASNVSKMLTEVGESQRWDAANSLVYEASVRLRDPVHGCMGAISLLQHQIHSLESELTTL 126 7***********8655*******************************************************************************999 PP DUF260 98 kee 100 ++e Lus10029061 127 RAE 129 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.744 | 28 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.0E-37 | 29 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MENSDDVERV MMLSSNSSQA SGGLNTITPC AACKLLRRRC AAQECPFSPY FSPLEPHKFA 60 YVHKVFGASN VSKMLTEVGE SQRWDAANSL VYEASVRLRD PVHGCMGAIS LLQHQIHSLE 120 SELTTLRAEI LHHRYNAAAA TPPSTMDIVT TTTTSPMIIN SPPPVDFSHD VRGQGAVLLP 180 PVTLSTDSSS SSSPSNRYGG ISNNDHNIPF YG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-39 | 29 | 150 | 11 | 130 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-39 | 29 | 150 | 11 | 130 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10029061 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970407.1 | 7e-67 | LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 2e-63 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A368RCJ5 | 2e-65 | A0A368RCJ5_SETIT; Uncharacterized protein | ||||
STRING | Lus10029061 | 1e-157 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 3e-53 | LOB domain-containing protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Lus10029061 |
Publications ? help Back to Top | |||
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