PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028824
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 549aa    MW: 61225.1 Da    PI: 4.2831
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028824genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.62.9e-50111372128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                   pGfrFhPtdeel+ +yLk+kv++k+l++ + i+ vd+y++ePwdLp  +k+k+++ ewyfFs  d+ky +g+++nrat++gyWk+tgkd+++ s + 
  Lus10028824  11 GPGFRFHPTDEELLRYYLKRKVTNKPLRF-DPISVVDVYRSEPWDLPvrAKLKSRDLEWYFFSLLDRKYGNGSKTNRATEKGYWKTTGKDRPIRS-NL 106
                  59*************************99.99***************5337777778**************************************.99 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   +vg+kktLv++ grap+ge+++Wvmheyrl
  Lus10028824 107 VTVGMKKTLVYHLGRAPRGERSNWVMHEYRL 137
                  9****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-598160IPR003441NAC domain
PROSITE profilePS5100556.210160IPR003441NAC domain
PfamPF023652.7E-2712137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MARGDSEAFL GPGFRFHPTD EELLRYYLKR KVTNKPLRFD PISVVDVYRS EPWDLPVRAK  60
LKSRDLEWYF FSLLDRKYGN GSKTNRATEK GYWKTTGKDR PIRSNLVTVG MKKTLVYHLG  120
RAPRGERSNW VMHEYRLSEE ELEKFGVGQD TYVLCRIFQK SGTGPKNGEQ YGAPFVEEEW  180
EDEDVPLLPG ENAVVTDGLD EFYGEYLDAV DFDQKLEVGD ERATAAVPVA TYYEETKNYV  240
DHGGSSSEDG SNPLIDGALV TVAVPVDQQL PYAQNEEVDN NCEEVNYVGS STKDLSLPKI  300
EDMVDSSFVD AGGSSQFADG LSLEAFELQD NMEPGSCLED PTDFNLEEYL DFDDMSFDPF  360
DPMENDASIY DPSPESNKDL NGGVDNADIR SENLPSMGGH ASSSEQKTDA MIPKFYPMKS  420
DFASNYPFIG KASKMLGDIP APPAYAAESP VKGAALHFAS AQEASSSIRV TAGMIRIEDM  480
GVRGNEMMFG KSMGVNVVMS ITWPQGFVEY TADPPRRIMG LVQHCNCYMN SRLMTAIEER  540
FRCEARDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4341619169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028824
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8852931e-101HQ885293.1 Linum usitatissimum clone Contig1165 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624571.11e-172NAC domain-containing protein 78
SwissprotQ84K001e-124NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A0M5JDB41e-171A0A0M5JDB4_MANES; NAC transcription factors 5
STRINGLus100288240.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53473247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-119NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]