PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10028794 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | SRS | ||||||||
Protein Properties | Length: 201aa MW: 22121.8 Da PI: 8.7332 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 121.7 | 9.2e-38 | 22 | 168 | 5 | 154 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 + +C+dCGnqak++C + RCR CC+ r ++C+thv stWvp++ rr +q+++ +s+++ s ++++ + ++++ ++ le Lus10028794 22 GRRCEDCGNQAKRECRYWRCRRCCRRRKLECQTHVSSTWVPTSLRRLQQAAARGSSTTH-------PSTSHQQ--------HHVLLHHHHHIPSDLES 104 679******************************************98644433322211.......1111111........11222233455667889 PP DUF702 103 sslPeevsseavfrcvrvssv.........ddge....eelaYqtavsigGhvfkGiLydqGlee 154 +++P ev s+a f+c +v+s+ dd + +e+aY+t+vsigGh+f+GiLydqG+++ Lus10028794 105 ENFPGEVTSMATFHCCKVRSLrldggrnhgDD-DrlvfDEYAYRTSVSIGGHLFNGILYDQGPQS 168 99****************99755444433322.1344479**********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.9E-36 | 22 | 167 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.0E-18 | 25 | 64 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 6.0E-15 | 107 | 166 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MMNGGGGETS AGSLRGGGAV AGRRCEDCGN QAKRECRYWR CRRCCRRRKL ECQTHVSSTW 60 VPTSLRRLQQ AAARGSSTTH PSTSHQQHHV LLHHHHHIPS DLESENFPGE VTSMATFHCC 120 KVRSLRLDGG RNHGDDDRLV FDEYAYRTSV SIGGHLFNGI LYDQGPQSER RQSSATAGVV 180 LAPLPPLVPC TFPLPTLHTQ * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 49 | KRECRYWRCRRCCRRRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10028794 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10028794 | 1e-147 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 2e-25 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Lus10028794 |