PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028372
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 362aa    MW: 41078.2 Da    PI: 5.8561
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028372genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.21.9e-5471381129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPtdeelv +yL+kkv ++k++l +vi+++d+y++ePwdL++  ++   e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v++ 
  Lus10028372   7 VPPGFRFHPTDEELVGYYLRKKVGSQKIDL-DVIRDIDLYRIEPWDLQErcRIGYeEQHEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDD 103
                  69****************************.9***************953433332566*************************************97 PP

          NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129
                   ++ l+g++ktLvfy+grap+g+ktdW+mheyrle
  Lus10028372 104 kTKLLIGMRKTLVFYQGRAPNGHKTDWIMHEYRLE 138
                  34455****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-595158IPR003441NAC domain
PROSITE profilePS5100559.1177158IPR003441NAC domain
PfamPF023651.4E-288137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MESSSCVPPG FRFHPTDEEL VGYYLRKKVG SQKIDLDVIR DIDLYRIEPW DLQERCRIGY  60
EEQHEWYFFS HKDKKYPTGT RTNRATMAGF WKATGRDKAV YDDKTKLLIG MRKTLVFYQG  120
RAPNGHKTDW IMHEYRLESD HDAPPQEEGW VVCRAFKKRS SNKRIQGCSS YNLQQYEESS  180
NDPIIDHNYY TIPPPPRHPS MPCHQQSSNF LMAQQGSSLL CKQEIILNDT IIRPADTNTS  240
TAFLDDSPDS FLNELPQLES PNSLPLMMKR PMTAASTSSS ADMINTSKMM IGGKVRDWRA  300
LDKFVASQLS QNDVELYYNN GGGGGESSSG LELPELLVLE SESGFFSSNS ACDIGICLFD  360
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-47216010170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028372
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024183159.11e-131NAC domain-containing protein 37
SwissprotQ9SL411e-118NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A2P6RLX51e-130A0A2P6RLX5_ROSCH; Putative transcription factor NAM family
STRINGLus100283720.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45653459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-116vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]