PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028056
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 402aa    MW: 43946.8 Da    PI: 7.8781
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028056genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.51.7e-9123907374
         GRAS   7 ecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshltaN 99 
                  ++Aea++   +++ la+ +L rl+el+sp+  ++m+Rlaa f+ AL+  l + +++ ++ +      +++  ++++laa++l++++sP++kf+h+taN
  Lus10028056   2 AAAEALTGpaKSNDLARVILVRLKELVSPNHgSNMERLAAQFADALNFLLDGGGNKHSANVYNGGGCRDEygQADVLAAFQLLQDMSPYVKFGHFTAN 99 
                  567777653377789***********8876549*****************99666666655433333333369************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                  qaIleav +++r+Hi+Dfdi++G+QW++L+q+L sR+egpp  +lRiT++ +  s+      s  +++etg++L  fA+++g pf+f+    ++ e++
  Lus10028056 100 QAILEAVTHDRRIHIVDFDIMEGIQWASLMQSLVSRKEGPPtpHLRITALTRGGSSsaanrrSIGTVQETGRQLVAFAASIGQPFSFHQCRLDSDESF 197
                  *************************************887666*******9866556778888899***********************9999***** PP

         GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.....adhnse..........sFlerflealeyysalfdsle 272
                  ++++ ++ +gEal+ n++l+l ++  +s ++     ++L+  + lsP++v+++e+e     +  n++            l rf+++l++ysa++dsle
  Lus10028056 198 RPSAVKLVRGEALVMNCMLHLPHFTYRSPESVA---SFLNGARLLSPRLVTLAEEElgpteV--NHAagsghlgsrdGCLSRFMDTLHHYSAVYDSLE 290
                  ***********************9977666666...9******************9666333..444567889998899******************* PP

         GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvs 369
                  a++p + ++r+ vEr++lg++i+  +a   + r+  +e  ++W e+l++aGF+   +s  + +qaklll  ++ dgyrvee   + lvlgWk+r+L+s
  Lus10028056 291 AGFPMQCRARALVERVFLGPQISGSLARIYRGRE--KEVGGSWWEWLTAAGFRREGVSFANHCQAKLLLGLFN-DGYRVEEMgCNRLVLGWKSRRLLS 385
                  ****************************999954..56679********************************.******98578999********** PP

         GRAS 370 vSaWr 374
                  +S W+
  Lus10028056 386 TSIWT 390
                  ****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.1621370IPR005202Transcription factor GRAS
PfamPF035145.8E-892390IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAAAEALTGP AKSNDLARVI LVRLKELVSP NHGSNMERLA AQFADALNFL LDGGGNKHSA  60
NVYNGGGCRD EYGQADVLAA FQLLQDMSPY VKFGHFTANQ AILEAVTHDR RIHIVDFDIM  120
EGIQWASLMQ SLVSRKEGPP TPHLRITALT RGGSSSAANR RSIGTVQETG RQLVAFAASI  180
GQPFSFHQCR LDSDESFRPS AVKLVRGEAL VMNCMLHLPH FTYRSPESVA SFLNGARLLS  240
PRLVTLAEEE LGPTEVNHAA GSGHLGSRDG CLSRFMDTLH HYSAVYDSLE AGFPMQCRAR  300
ALVERVFLGP QISGSLARIY RGREKEVGGS WWEWLTAAGF RREGVSFANH CQAKLLLGLF  360
NDGYRVEEMG CNRLVLGWKS RRLLSTSIWT TPPSVSDSES S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-47439027379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028056
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022766355.10.0nodulation-signaling pathway 2 protein-like
SwissprotQ5NE241e-179NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLB9RJ620.0B9RJ62_RICCO; Nodulation signaling pathway 2 protein, putative
STRINGLus100280560.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-141GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]