PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027943
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 421aa    MW: 46236.2 Da    PI: 9.6353
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027943genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.42.6e-13155248699
                  ..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   6 tpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  + ++v ++++l l  kfa++h     +kk +    +l  ++g ++e  ++  k +++ ++++GW++F ++n +k+  f++F++ g+s+f  +v+vf+ 
  Lus10027943 155 IMPSVIEEKQLPLAIKFARKHgrklAMKKWS--NAQLCLPNGTVFEAGITAGKDRKELWFKRGWSKFMDDNSIKQDFFLTFEYAGDSRF--NVGVFDP 248
                  4478889999***********9977556556..57888899********99999999****************************9999..****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1319125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-1519125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.74224123IPR003340B3 DNA binding domain
CDDcd100177.62E-824121No hitNo description
SMARTSM010199.8E-625123IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-14147251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-15149251IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.051150249IPR003340B3 DNA binding domain
SMARTSM010191.9E-8151249IPR003340B3 DNA binding domain
CDDcd100178.68E-10151247No hitNo description
PfamPF023621.6E-10154247IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-9313419IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-10313419IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.261319420IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MAAAKHGGAS SSSSSPLVSS PHQSFMRVIL PHVLQAKKMV LPLKFVGLYG SELSSTAELF  60
LPNGAIWTVG VEKGRNASSG GNEARFGKNW AEFVGRHSIS TGFFLRFDYL RDSKFNVKTY  120
DTSCCGITYR FPSPSAAAAA GEVEDRSVEN FFRLIMPSVI EEKQLPLAIK FARKHGRKLA  180
MKKWSNAQLC LPNGTVFEAG ITAGKDRKEL WFKRGWSKFM DDNSIKQDFF LTFEYAGDSR  240
FNVGVFDPST CEILYPPPPP PAVVDETECD ALLSDLEASG IEVASKFNCL TFPKMSSESK  300
TAMREAMANK RVDVPSFIVV MMPAAQQHRT TYRITVPTGI VQKLQMKYGD RVNLKVSGGG  360
GSGGFEIVLK HSGPSLTMVG KKWTGFYYAN QLKEGDVCLF QVIKPSSSNG FEILVAIFRV  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027943
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100279430.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.16e-16B3 family protein