PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027600
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 1060aa    MW: 117316 Da    PI: 6.7289
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027600genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.4e-23125226199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l
  Lus10027600 125 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLIAGDSVLFI--RDEKQQL 219
                  99*****************************9445444.38************************************************..5688889 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  Lus10027600 220 LLGIRRA 226
                  ****997 PP
2Auxin_resp117.79.9e-39251334183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F+v++nPras+seFvv+++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g++dldpvrW++S+Wr+L+
  Lus10027600 251 AAHAAANNSPFTVFFNPRASPSEFVVPLAKYYKAVYsNQVSLGMRFRMMFETEESGTRRYMGTITGITDLDPVRWKGSQWRNLQ 334
                  79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-43115254IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-41116240IPR015300DNA-binding pseudobarrel domain
CDDcd100174.62E-20124216No hitNo description
SMARTSM010191.7E-23125227IPR003340B3 DNA binding domain
PfamPF023624.1E-21125226IPR003340B3 DNA binding domain
PROSITE profilePS5086312.055125227IPR003340B3 DNA binding domain
PfamPF065076.2E-34251334IPR010525Auxin response factor
PfamPF023095.2E-79441032IPR033389AUX/IAA domain
PROSITE profilePS5174526.929471031IPR000270PB1 domain
SuperFamilySSF542777.46E-79601025No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1060 aa     Download sequence    Send to blast
MKSPTTANPA EEAEKKTINV ELWQACAGPL VNLPAGGTHV VYFPQGHSEQ VAASMKKDVD  60
AQIPNYPNLP SKLLCLLHNV TLHADPETDE VYAQMTLQPV PSYDKEALLR SDLALRSNKP  120
QPEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFSMQP PAQELVARDL HDNVWTFRHI  180
YRGQPKRHLL TTGWSLFVSG KRLIAGDSVL FIRDEKQQLL LGIRRANRQP TNLSSSVLSS  240
DSMHIGILAA AAHAAANNSP FTVFFNPRAS PSEFVVPLAK YYKAVYSNQV SLGMRFRMMF  300
ETEESGTRRY MGTITGITDL DPVRWKGSQW RNLQVGWDES TAEERRNRVS VWEIEPVTAP  360
FFICPPPFFR SKRPRQPGMT DDDSSDLDRI LKRSMPWLGD DILKDPGSLP GLSLVQWMNM  420
QQNSSLAKTV QQTYMQSLPG PGLPNLAGTG DSSRQLGGLS APQILQQNNF QLTAPQLPQQ  480
APQLDQFIKM PSSMNPMASV VQVPDGIEQP RQKLMSQTPS TSQVQASSIV QHQQPNQSNQ  540
FVRNLSPSLQ QQHSQTQMQN FVSTQIPDQL NQHFQGSDNH LQIQLLQKLQ QQQQQSLLAQ  600
QAVGQLSQLQ EPQRQQLDAS QSFSRSVTPN QMPQTVTSSL PQSNIVQQQI AKGNNNQVDV  660
RFSHLPQQSQ KLQDQQTSLL PEVPGHIRVP PCTTSNQLST GMLNARAVTD EVPSCSTSPS  720
TNNCSNLIQP MMNDIYPSTG TLLSPGALDT MPYAGGMFKN MQQKSDVKPS LNISKNQNQG  780
FFSVKGPTAQ TDYLDTSSST SACLSQNDVQ LQQNNVSYNS QPILMRGETN QDGGELQADL  840
RSNGVYGTGI DGQNQLGIHM HSDDLLTKSM VGVLGKDFSN NLPSGEMLAN CANSNSKKPQ  900
QELSSSIVSQ SFGVPDMAFN SIDSSINDSS FLNRSSWGAQ PQFQRMRTYT KVYKRGAVGR  960
SIDITRYSGY DELKQDLARR FGIEGQLEDR GRVGWKLVYV DHENDVLLVG DDPWEEFVNC  1020
VRCIKILSPQ EVQQMSLDGD FGNSVLPNQA CSSSDNGNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1691435547388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027600
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876353.10.0auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A2N9HN130.0A0A2N9HN13_FAGSY; Auxin response factor
STRINGLus100276000.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19