PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027573
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 390aa    MW: 43215.3 Da    PI: 4.2357
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027573genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97e-20116166155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++++GVr+++ +g+W+AeIrdp++   r+r +lg++ taeeAa  +++a+ kl+g
  Lus10027573 116 KKFRGVRQRP-WGKWAAEIRDPVK---RQRLWLGTYNTAEEAAMVYDNAAIKLRG 166
                  59********.**********755...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.15E-33116173No hitNo description
SMARTSM003802.3E-37117180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-30117173IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21117173IPR016177DNA-binding domain
PROSITE profilePS5103223.222117174IPR001471AP2/ERF domain
PfamPF008471.5E-12117166IPR001471AP2/ERF domain
PRINTSPR003671.0E-9118129IPR001471AP2/ERF domain
PRINTSPR003671.0E-9140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDPSFLCPTK YTEHRSLTRK YITTAKPSLK RRKSSAMESG HPTRVVRISV TDPDATDSSS  60
DEESEFFGRR RVKRYVEEIS IGCEEVSTAD AAPALPARKR TVAVEVRPVQ TGGGGKKFRG  120
VRQRPWGKWA AEIRDPVKRQ RLWLGTYNTA EEAAMVYDNA AIKLRGPDAQ TNFINPIGKE  180
VEKPVESTSG GGYDSCDESS HNNNNLSSPT SVLQFRTDEY SEPLVEPDEP MELLLAEPVG  240
EEEATAGLQF LQECEGESSH CNNNDINHNN QVTDFYGDDD FSGECYYSPQ HLSSFLEEST  300
SFTDDLFNFT GCSEEEAKLL QPSPIAFNDD NESIVASGAA LLQESFSIRC DDIFADIPNV  360
GNSPAFQDND DDYFQDIGDL FFSEPLVSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20115173362ATERF1
3gcc_A3e-20115173362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027573
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090126.19e-94ethylene-responsive transcription factor CRF4
TrEMBLA0A067JQB62e-92A0A067JQB6_JATCU; Uncharacterized protein
STRINGLus100275730.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-60cytokinin response factor 4