PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027543
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 517aa    MW: 57379.4 Da    PI: 10.3143
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027543genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67e-16289799
                 .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 p d +++g l lp kfa+ehg++     ++ l+ ++g +W v +   k+s++ +++ kGW++F+k   L+   f+vF+l +++ f  +v+++++
  Lus10027543  2 PTDPFREGKLQLPEKFAREHGSE--LANEVLLKLPNGAEWPVSV--VKSSRKkIWFDKGWSKFAKFYSLEPTNFLVFQLADHNHF--KVMIVDT 89
                 677789999***********966..7779***************..5555555*************************9987888..8877765 PP
2B332.51.5e-101922751899
                  --HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
           B3  18 lpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                  +p  f+e++  +  +s+++ l+  +   W+ k+ +      +++y+ +k W +F++an L++gD++ F+l++  +e++++v +fr+
  Lus10027543 192 VPVAFFETNFVE--NSVDIFLQLANVGLWKGKYFVidyGYAKRAYFEAKSWGSFARANCLRVGDMCAFELVEVdNEARFNVVIFRT 275
                  677888888533..6788999999999999999556635555669999**********************98889999*****997 PP
3B336.21.1e-113754561699
                  EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
           B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                  l +  +f++++g       +++l+    g +W+vk+ +  +++ +r ++ t+ W +F+++ gLk+gD++ F+l++  ++ +l+v +fr+
  Lus10027543 375 LFVETNFVNQCG-------DIVLQVpGVGGEWTVKYLVrgSGNLKRaVLQTESWTSFAEDTGLKVGDVCAFELVEFdTKPRLNVVIFRA 456
                  444555554444.......57777745689******8855334344477779********************99544888999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.20E-13188No hitNo description
PROSITE profilePS5086313.803190IPR003340B3 DNA binding domain
SMARTSM010199.5E-9190IPR003340B3 DNA binding domain
PfamPF023621.3E-13288IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-17890IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-18990IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.4E-4176276IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-11178275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-11183276IPR015300DNA-binding pseudobarrel domain
CDDcd100178.22E-9188274No hitNo description
PROSITE profilePS508639.7192276IPR003340B3 DNA binding domain
PfamPF023621.6E-7193275IPR003340B3 DNA binding domain
SMARTSM010191.9E-7365457IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-11374462IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-11376456IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-12376455No hitNo description
PfamPF023621.9E-9376456IPR003340B3 DNA binding domain
PROSITE profilePS5086310.362388457IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MPTDPFREGK LQLPEKFARE HGSELANEVL LKLPNGAEWP VSVVKSSRKK IWFDKGWSKF  60
AKFYSLEPTN FLVFQLADHN HFKVMIVDTS ATGINYSKKK SNANVVPETN EAVERNQPSS  120
PKAQGTASGM KADRNRSSNP RRPKPLTVDK EASGILGKAN VCLNLKIPPS REFISVCLML  180
YVGWFLFKWQ NVPVAFFETN FVENSVDIFL QLANVGLWKG KYFVIDYGYA KRAYFEAKSW  240
GSFARANCLR VGDMCAFELV EVDNEARFNV VIFRTSPSLV GNGKTTVIPA TESGFTYKQQ  300
KHGHSPRTSD KQHLTSPHPI KLRRRIGVKR TATTSKGQNQ SRVPRIEAPL IIAKKAGFLA  360
RAKAVFTSDS PTTRLFVETN FVNQCGDIVL QVPGVGGEWT VKYLVRGSGN LKRAVLQTES  420
WTSFAEDTGL KVGDVCAFEL VEFDTKPRLN VVIFRASRVA NRCHRSGIGP TTKATTSKNS  480
TSPEWKSGCT SKSERHESSH GSTEGLRTGE LGDEVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027543
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100275430.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.13e-12B3 family protein