PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027538
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 413aa    MW: 44930.7 Da    PI: 5.1276
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027538genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30188247260
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp++++i Y g+H+h+k
  Lus10027538 188 NDVWAWRKYGQKPIKGSPYPRNYYRCSSTkGCGARKQVERSTTDPNMFIISYAGDHTHPK 247
                  8**************************998****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-31174248IPR003657WRKY domain
SuperFamilySSF1182903.14E-26182248IPR003657WRKY domain
PROSITE profilePS5081132.512182248IPR003657WRKY domain
SMARTSM007742.6E-36187247IPR003657WRKY domain
PfamPF031069.3E-26188246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MANNDDWDLT AIVRSCTTSA GGPNEESDRN NPLAGLTFET EPDPFAFPDL PHSGFQELLQ  60
DSYDNKPFSS GQRDLIIPPP PPPLTPNTSD FGGQSQRRTE VTSPRVVVVR NQQQQTTQDL  120
GNRHQRQMQG SSSSGYMGGG SSSSNNLAFS FSSSLRSIQS QPATSRPRKK KNNQKRLVVQ  180
VTADNLSNDV WAWRKYGQKP IKGSPYPRNY YRCSSTKGCG ARKQVERSTT DPNMFIISYA  240
GDHTHPKPTH RNSLAGSTRT KFPLKKEPGH VSSTSAPPPT LQTITTSHDK KPVACSSPVA  300
GSSPTTPLSA TMDHEAAVNF RTATADHDMM TTRITSADHV AYLQDQFESG DDDDDDDDDA  360
NVEEFGYSLD DDEGDDVDDG NFIRGSNNRE LFGDDFSSWI FGNSSSTGGG GC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-20178249880Disease resistance protein RRS1
5w3x_D4e-20178249880Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027538
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513635.12e-72probable WRKY transcription factor 27
TrEMBLB9RIR65e-71B9RIR6_RICCO; Uncharacterized protein
STRINGLus100275380.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.13e-50WRKY DNA-binding protein 27