PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027357
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 480aa    MW: 54154.1 Da    PI: 6.3589
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027357genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.93.1e-43521811128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  lp G+rF P+deel+++yL kk++g+ l++ + i +v++y+++P++   k    +e+ewyfF++rd+ky++g+r+nra+ +g+Wkatg dk+v s +g
  Lus10027357  52 LPIGYRFLPKDEELINQYLIKKISGQALPT-NKIVDVNLYQYNPETVIeKYRPCGEREWYFFTPRDRKYKNGERPNRAAGDGFWKATGADKAVQSLDG 148
                  699***************************.77*************97344445899***************************************** PP

          NAM  98 elvglkktLvfykg..rapkgektdWvmheyrl 128
                   ++g +k Lvfy+g  ++++g kt+W+mheyr+
  Lus10027357 149 VVIGYRKALVFYRGkqHKQDGIKTNWIMHEYRV 181
                  ************7633677899*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-5150212IPR003441NAC domain
PROSITE profilePS5100552.13152212IPR003441NAC domain
PfamPF023651.3E-2353181IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MLAISSASSV SELAAGSSIT PAPSNTAAVL PKDELEEPQE ANFIDHEFFN SLPIGYRFLP  60
KDEELINQYL IKKISGQALP TNKIVDVNLY QYNPETVIEK YRPCGEREWY FFTPRDRKYK  120
NGERPNRAAG DGFWKATGAD KAVQSLDGVV IGYRKALVFY RGKQHKQDGI KTNWIMHEYR  180
VNPSTVELPP RVSRGDNDMR LDDYVLCRIY RKPGRSSDYK QPRKRENNCA AADADVDVDA  240
SLQQLDDHVS EPATSAVNHG CQTSHHPMAM DTGTESDSKR PPHSENSADN FSLHRPDHDP  300
EAGMRSSNHG FQNHFPMAME SDYRQPPQRE NRFAGNISFH HGYQQTENSF LGNILFQQPG  360
YYSEPGTSSL NHGYQQTVHP MAMADGTSSL LQHPYSHLHH PLPSISSNLP MDPMAMADAS  420
SLRRSSYYPP TQALRPLDDF NSMWKIPYGL GPDPLVNFES EWIHDDDKVD PFAHPMSKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-485121216165NO APICAL MERISTEM PROTEIN
1ut4_B6e-485121216165NO APICAL MERISTEM PROTEIN
1ut7_A6e-485121216165NO APICAL MERISTEM PROTEIN
1ut7_B6e-485121216165NO APICAL MERISTEM PROTEIN
3swm_A7e-485121219168NAC domain-containing protein 19
3swm_B7e-485121219168NAC domain-containing protein 19
3swm_C7e-485121219168NAC domain-containing protein 19
3swm_D7e-485121219168NAC domain-containing protein 19
3swp_A7e-485121219168NAC domain-containing protein 19
3swp_B7e-485121219168NAC domain-containing protein 19
3swp_C7e-485121219168NAC domain-containing protein 19
3swp_D7e-485121219168NAC domain-containing protein 19
4dul_A6e-485121216165NAC domain-containing protein 19
4dul_B6e-485121216165NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027357
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100273570.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101121642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.14e-51NAC family protein