PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026996
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 430aa    MW: 46850.8 Da    PI: 8.2306
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026996genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.5e-114268127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++++ C+++ rtG C++G++C+F+H+p
  Lus10026996 42 PGEPDCSYYIRTGLCRFGATCRFNHPP 68
                 5789*********************97 PP
2zf-CCCH39.11.3e-1289113327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C+ff++tGtCk+G++CkF+H++
  Lus10026996  89 QPECQFFLKTGTCKFGATCKFHHPK 113
                  799********************96 PP
3zf-CCCH38.22.3e-12135159327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C +++rtG+Ck+G++CkF+H++
  Lus10026996 135 EVECAYYLRTGQCKFGSTCKFHHPQ 159
                  689********************97 PP
4zf-CCCH33.56.9e-11290316127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+++ +tG Ck+G+ C+F+H++
  Lus10026996 290 PGQPECQYYIKTGDCKFGAVCRFHHPR 316
                  5789*********************96 PP
5zf-CCCH40.25.7e-13336362127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++lC f++r+G+Ck+G++CkF H++
  Lus10026996 336 PGEPLCIFYSRYGICKFGPSCKFDHPM 362
                  589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-54168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5874169IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-84368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-54669IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-44767IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-686113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.33886114IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-1089113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-690115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-492112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356132160IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-6132159IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-10135159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6135160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4138158IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-4289316IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155289317IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6291316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5293319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4295317IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7335362IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709335363IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10337362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5338362IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4340360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEFDPMSREG TSLTPSLNEG SMWQVNLRSS EAMEPGLYPE RPGEPDCSYY IRTGLCRFGA  60
TCRFNHPPNR KLAIAAARMK GEFPERIGQP ECQFFLKTGT CKFGATCKFH HPKDKAGIAG  120
RVSLNSLGFP HRPNEVECAY YLRTGQCKFG STCKFHHPQP SNLMLPLRGS PIYPTVQSPT  180
TPGQQSYPGG LTNWSRASYI TSPRWQGPSS YTPLILPQGV VSVPGWNAYN GQVGSVSSPD  240
SQQQSGIYGS SHQNEPSSAE AQGAFSPYRS GSVSVGYYAL QRDNVFPERP GQPECQYYIK  300
TGDCKFGAVC RFHHPRERLI PAPDCVLSPI GLPLRPGEPL CIFYSRYGIC KFGPSCKFDH  360
PMGIFTYNMS GSTSADAPVQ RLLGSSSGPA SLALTSEGLV EASSAMPRRL PLSEPRQMAS  420
GDDNIDTEG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026996
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021620512.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A251KCB90.0A0A251KCB9_MANES; Uncharacterized protein
STRINGLus100269960.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1