PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026966
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 377aa    MW: 41577.1 Da    PI: 9.4033
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026966genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1752.2e-54311611128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  lppGfrFhPtdeel+++yL +k+++  +++ +++++vd++k+ePwdLp k+k +ekewyfFs+rd+ky+tg r+nrat++gyWk+tgkdke++++   
  Lus10026966  31 LPPGFRFHPTDEELITYYLVNKIADAGFSA-RAVADVDLNKSEPWDLPGKAKMGEKEWYFFSQRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNTqss 127
                  79***************************9.88***************99999****************************************99787 PP

          NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +gelvg+kktLvfykgrap+gek++Wvmheyr+
  Lus10026966 128 gSGELVGMKKTLVFYKGRAPRGEKSNWVMHEYRI 161
                  77788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-6329183IPR003441NAC domain
PROSITE profilePS5100561.33131183IPR003441NAC domain
PfamPF023654.5E-2932161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MNQPTISSDH KGKGHSGNNA GDGRRPDDQK LPPGFRFHPT DEELITYYLV NKIADAGFSA  60
RAVADVDLNK SEPWDLPGKA KMGEKEWYFF SQRDRKYPTG VRTNRATNTG YWKTTGKDKE  120
IFNTQSSGSG ELVGMKKTLV FYKGRAPRGE KSNWVMHEYR IHSKSSFRPS KQEEWVVCRV  180
FKKSPAGGNK NKFPSTPSTS STSHYYHHHH HQSRSLMNPY TTETTLLSHP FGQRPPSYSN  240
VNNMMMMTSS ELADLTRAFR AGTTAAGSST MMMDVNNNNN NFYYPATIAG LNLNLGGVLN  300
NNNNINNVIA GGGGGGASSM TMMDMMSTPF PDEGFAGGGT NGDQLINNNN TAGPSTFMGN  360
VDNCMDFDTY WPPSNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-563118417166NO APICAL MERISTEM PROTEIN
1ut4_B3e-563118417166NO APICAL MERISTEM PROTEIN
1ut7_A3e-563118417166NO APICAL MERISTEM PROTEIN
1ut7_B3e-563118417166NO APICAL MERISTEM PROTEIN
3swm_A3e-563118420169NAC domain-containing protein 19
3swm_B3e-563118420169NAC domain-containing protein 19
3swm_C3e-563118420169NAC domain-containing protein 19
3swm_D3e-563118420169NAC domain-containing protein 19
3swp_A3e-563118420169NAC domain-containing protein 19
3swp_B3e-563118420169NAC domain-containing protein 19
3swp_C3e-563118420169NAC domain-containing protein 19
3swp_D3e-563118420169NAC domain-containing protein 19
4dul_A3e-563118417166NAC domain-containing protein 19
4dul_B3e-563118417166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026966
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912668.11e-121protein CUP-SHAPED COTYLEDON 1
TrEMBLA0A2C9W4N01e-116A0A2C9W4N0_MANES; Uncharacterized protein
TrEMBLA0A2C9W4Q21e-116A0A2C9W4Q2_MANES; Uncharacterized protein
STRINGLus100269660.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-94NAC domain containing protein 38