PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026921
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 367aa    MW: 39892.5 Da    PI: 8.1254
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026921genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.5e-141071861696
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   +lp+kf++++g++  +s + ++ d +g +W  +l   +++  ++ l++GWke+v +n+Lk gD++  +l++  ++++v+++
  Lus10026921 107 DYLPRKFVSANGIV-GKSSETVVVDGKGAKWPARLVTlQNTNAEVKLKDGWKEYVTENRLKLGDSLSVELVR-GGTNPVFRI 186
                  48*********888.56668888999*********775777777*************************997.788888876 PP
2B341.62.2e-13265350592
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  ++++ + k g lv+p +fa ++g++   s  +++ +e g  + v+l++ k++ +y+ ++GW + v+ n L+ gD++ F+l++  ++++
  Lus10026921 265 TLTNVSIKGGYLVIPQEFAVQNGLNVV-SCNVSISNEAGIPYPVTLNIIKSGTTYLGGNGWTKLVETNCLRIGDVLRFELNEA-GQKP 350
                  44666778899***********99965.569***************99999999*************************9764.3334 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010196.3E-892190IPR003340B3 DNA binding domain
PROSITE profilePS5086311.19492190IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-13103184IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-11104185IPR015300DNA-binding pseudobarrel domain
PfamPF023628.5E-13107186IPR003340B3 DNA binding domain
CDDcd100177.73E-15108186No hitNo description
SuperFamilySSF1019362.75E-15256357IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-14256358IPR015300DNA-binding pseudobarrel domain
CDDcd100173.50E-13260357No hitNo description
PROSITE profilePS5086311.364261357IPR003340B3 DNA binding domain
SMARTSM010193.4E-12262357IPR003340B3 DNA binding domain
PfamPF023625.2E-11263351IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MVLDVMAFDP SLVERKYHFA APPHVSVKIE AEQFPTDLVE PNTDHCTLGT PREKNAVKAS  60
LAGKSGSAGT KRPEIAKKNP THGEKKRAEA RLAGNTPTAE PNDHCFDYLP RKFVSANGIV  120
GKSSETVVVD GKGAKWPARL VTLQNTNAEV KLKDGWKEYV TENRLKLGDS LSVELVRGGT  180
NPVFRITGLG RIPMENPRMN VEEVKKEPNH EESAAAEMSS RDRSLNIKVS GCALNLENEK  240
PVHEEPAPPA AFMYPQDGTK SFVVTLTNVS IKGGYLVIPQ EFAVQNGLNV VSCNVSISNE  300
AGIPYPVTLN IIKSGTTYLG GNGWTKLVET NCLRIGDVLR FELNEAGQKP VMNFKVSCLF  360
PSPIPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026921
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100269210.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16161410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-20B3 family protein