PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10026617

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 278aa MW: 31841.2 Da PI: 8.8394

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10026617	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.7	1.1e-53	26	151	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL+++++++++++ ++i+evdiyk++Pw+Lp+k+ +ekewyfFs+rd+k+++g r+nrat sgyWkatg+dk+++s +++ Lus10026617 26 LPPGFRFHPTDEELIMCYLRNQATSRPCPV-SIIPEVDIYKFDPWQLPEKAGFGEKEWYFFSPRDRKTPNGVRPNRATGSGYWKATGTDKSIYS-GSQ 121 79**************************.89***********99999**************************************.99 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfykg+ pkg ktdW+mheyrl Lus10026617 122 YVGVKKALVFYKGKPPKGIKTDWIMHEYRL 151 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-67	16	178	IPR003441	NAC domain
PROSITE profile	PS51005	60.179	26	178	IPR003441	NAC domain
Pfam	PF02365	6.8E-27	27	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MMMIAGEGTA TRTKNMNMNM NNDYVLPPGF RFHPTDEELI MCYLRNQATS RPCPVSIIPE 60 VDIYKFDPWQ LPEKAGFGEK EWYFFSPRDR KTPNGVRPNR ATGSGYWKAT GTDKSIYSGS 120 QYVGVKKALV FYKGKPPKGI KTDWIMHEYR LCDSRTRTVK TSGSMRLDEW VLCRIYKKKP 180 SVSKQYIEQD ISGTEAYKEQ HQQMLKLSKT CSLSDLDSLG PISQLLDDHS NLNYNTNTEF 240 LVPENTVGSA QNLGQHQVMN DQQQPFLVNP PMMYQFQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-71	26	184	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-71	26	184	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-71	26	184	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-71	26	184	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-71	26	184	20	174	NAC domain-containing protein 19
3swm_B	1e-71	26	184	20	174	NAC domain-containing protein 19
3swm_C	1e-71	26	184	20	174	NAC domain-containing protein 19
3swm_D	1e-71	26	184	20	174	NAC domain-containing protein 19
3swp_A	1e-71	26	184	20	174	NAC domain-containing protein 19
3swp_B	1e-71	26	184	20	174	NAC domain-containing protein 19
3swp_C	1e-71	26	184	20	174	NAC domain-containing protein 19
3swp_D	1e-71	26	184	20	174	NAC domain-containing protein 19
4dul_A	1e-71	26	184	17	171	NAC domain-containing protein 19
4dul_B	1e-71	26	184	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10026617

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021807478.1	1e-111	NAC transcription factor 29-like
Swissprot	K4BNG7	1e-108	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A061EHU2	1e-110	A0A061EHU2_THECC; NAC domain protein, IPR003441
TrEMBL	A0A167LBQ8	1e-110	A0A167LBQ8_HEVBR; NAC domain protein
STRING	Lus10026617	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4103	32	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-102	NAC-like, activated by AP3/PI

Link Out ? help Back to Top
Phytozome	Lus10026617

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]