PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10026409 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 211aa MW: 23510.9 Da PI: 5.9704 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.1 | 1.9e-33 | 76 | 134 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d + v++tYeg+Hnh+ Lus10026409 76 LDDGYKWRKYGQKVVKGNPNPRSYYKCTYVGCPVRKHVERASTDLRSVITTYEGKHNHD 134 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.1E-37 | 61 | 136 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-29 | 68 | 136 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.597 | 71 | 136 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-37 | 76 | 135 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.4E-26 | 77 | 134 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence Send to blast |
MDTPENSSIS IGGGDDDFDS HRSGRDEIDE DEPDAKRWRR DVENDGISSS SMAATGSKTV 60 REPRVVVQTR SDIDILDDGY KWRKYGQKVV KGNPNPRSYY KCTYVGCPVR KHVERASTDL 120 RSVITTYEGK HNHDVPAARG SSHSAARRAV QPESNTTAPS MRRPPMVQQH EEVGLGFSEL 180 MMGNAMGESI FNRSTKDEPR DESFLESLLF * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-37 | 67 | 137 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-37 | 67 | 137 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10026409 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027334209.1 | 9e-81 | WRKY transcription factor WRKY24-like | ||||
Swissprot | Q6B6R4 | 2e-65 | WRK24_ORYSI; WRKY transcription factor WRKY24 | ||||
TrEMBL | A0A3G1KLG9 | 1e-151 | A0A3G1KLG9_LINUS; WRKY transcription factor 36 | ||||
STRING | Lus10026409 | 1e-155 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1077 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38470.1 | 2e-53 | WRKY DNA-binding protein 33 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10026409 |
Publications ? help Back to Top | |||
---|---|---|---|
|