PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026265
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 402aa    MW: 45421.4 Da    PI: 9.0121
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026265genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.41.8e-1117921398
                 TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
           B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98
                 ++rl +p  f+ ++ + +   +   +l+++ g+ + v++  ++++   +  +GWkeFv +n L +gDf+vF++++  + f   v++f+
  Lus10026265 17 EHRLAIPVAFT-KYlD-D---GEAAVLRSSCGKCYLVNI--SGRD---FKDEGWKEFVADNSLHVGDFLVFRYNNAhKVF--DVMAFD 92
                 5789******9.7733.2...236999************..4444...5689********************98765555..666665 PP
2B347.53.3e-15158255596
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.........EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.......rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  +++  +l+++ l +pk+fa+++++++ + + ++l +e+grsW+  li        +k +++ vl kG  +F ++n+Lk gD++ ++l++ s+ ++v+k
  Lus10026265 158 TIRRWNLERKSLHIPKTFARKNDLESMGRRSVILLNEEGRSWTTDLIGykklishSKLDRQAVLDKGLHRFLEENRLKLGDTFNLELVQ-SGNNPVFK 254
                  56677889999***********99999999****************767888887888888*************************998.78878887 PP

                  E CS
           B3  96 v 96 
                  +
  Lus10026265 255 M 255
                  5 PP
3B344.33.1e-14301388595
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                   ++  +l+ ++l++p  f++ +g+    +  +tl++ +g  + v l+ + k+++  +++GWke vk+ngL+egD+++F+l++ +++++v++
  Lus10026265 301 RMTGTYLRGSILIVPLGFCKMNGLTGV-TCSMTLRNDRGSCYPVILK-SIKDRAACIGSGWKEVVKENGLQEGDILMFELVE-TGTKPVIT 388
                  55667788899********99955533.347***************4.55556689***********************998.66666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.33E-153101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-15496IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.785594IPR003340B3 DNA binding domain
CDDcd100171.36E-16692No hitNo description
SMARTSM010194.8E-8894IPR003340B3 DNA binding domain
PfamPF023627.8E-91785IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-16150254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-14150253IPR015300DNA-binding pseudobarrel domain
CDDcd100175.02E-11153254No hitNo description
PROSITE profilePS5086310.179154261IPR003340B3 DNA binding domain
SMARTSM010192.6E-8155259IPR003340B3 DNA binding domain
PfamPF023624.0E-13157255IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-16293390IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-18294390IPR015300DNA-binding pseudobarrel domain
CDDcd100174.16E-17296389No hitNo description
PROSITE profilePS5086311.97297392IPR003340B3 DNA binding domain
SMARTSM010196.3E-17297393IPR003340B3 DNA binding domain
PfamPF023626.5E-12302388IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MADGKPHFFR PLLPGFEHRL AIPVAFTKYL DDGEAAVLRS SCGKCYLVNI SGRDFKDEGW  60
KEFVADNSLH VGDFLVFRYN NAHKVFDVMA FDPSACEFQY PPSSSSTLPF HASNRIEDTN  120
EEALENGRDH HRPTYGKKDQ VKEKGDSCVP KNPSFVVTIR RWNLERKSLH IPKTFARKND  180
LESMGRRSVI LLNEEGRSWT TDLIGYKKLI SHSKLDRQAV LDKGLHRFLE ENRLKLGDTF  240
NLELVQSGNN PVFKMSGLHS NPAVIKEEME KVRIKKIEMM IEKERSSPGS STIMHPYFLV  300
RMTGTYLRGS ILIVPLGFCK MNGLTGVTCS MTLRNDRGSC YPVILKSIKD RAACIGSGWK  360
EVVKENGLQE GDILMFELVE TGTKPVITFK VTQVLVTITM H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026265
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100262650.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16161410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.14e-42B3 family protein