PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10026212 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 199aa MW: 23382.6 Da PI: 9.6671 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 96.5 | 1.8e-30 | 36 | 129 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+ltpsdv+k++rlv+pkkfa ++ +++k ++++l+++d+ +sW+++++y+++s+++v+t+GW++Fvk+++Lke+D+++F++ + Lus10026212 36 FQKELTPSDVGKLNRLVIPKKFALKYfsnnytlnEYDKDNDVELVFYDKGMKSWRFRYCYWRSSQSFVFTRGWNRFVKDKKLKEKDIITFYRCN 129 99********************************99999****************************************************543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-34 | 32 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-28 | 33 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.47E-26 | 34 | 140 | No hit | No description |
PROSITE profile | PS50863 | 13.803 | 36 | 145 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-24 | 36 | 140 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-27 | 36 | 130 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MAEDASSSSM RIIVSHHRGD QNVSNETPKW CRTHLFQKEL TPSDVGKLNR LVIPKKFALK 60 YFSNNYTLNE YDKDNDVELV FYDKGMKSWR FRYCYWRSSQ SFVFTRGWNR FVKDKKLKEK 120 DIITFYRCNV AEHHQFFFID ITRHRSSYEA NANGSSTEMD LIGFNLRPLM THKEETLLAT 180 NNIDVQGKGV RLFGVQLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 5e-31 | 32 | 144 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 5e-31 | 32 | 144 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10026212 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021621544.1 | 5e-48 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Swissprot | Q9C688 | 4e-43 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | A0A2C9VHU4 | 1e-46 | A0A2C9VHU4_MANES; Uncharacterized protein | ||||
STRING | Lus10026212 | 1e-148 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5000 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 2e-45 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10026212 |