PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025913
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 264aa    MW: 29682.1 Da    PI: 8.5729
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025913genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.5e-1710105199
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  ffk+l++++  ++  + +pkkfa+eh  +     s +++l+ ++g+ W v+l   +  +g+ ++++kGW++F +    + g f++F+l ++s+f  +v
  Lus10025913  10 FFKILLQHNIEAN-YMLIPKKFAKEHcrE----LSNQIILKVPNGEAWPVELVRdDEAKGGlVWFGKGWQKFSERYCFRHGHFLLFELLHNSSF--LV 100
                  8899977666666.5***********532....6678***************7753344448****************************9*99..99 PP

                  EEE-S CS
           B3  95 kvfrk 99 
                   +f++
  Lus10025913 101 LIFNR 105
                  99987 PP
2B351.51.8e-161792611197
                  HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   ++++  +p kf+e++  k  +s +++    +g+sW vkl++ ++ + + l++GW +F+k+n+Lk+gD+++F l + ++f  +v++ 
  Lus10025913 179 INRSCPAVPMKFVEKYVTK--SSEEMVELKVDGESWAVKLKIYQQASYCQLSEGWIQFAKDNNLKAGDTCTFVLASATSF--NVHIS 261
                  55566789********644..4556777778*********7777777799***********************9988888..66654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-237105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-228106IPR015300DNA-binding pseudobarrel domain
CDDcd100173.83E-198104No hitNo description
PROSITE profilePS5086313.1979106IPR003340B3 DNA binding domain
PfamPF023625.2E-1410105IPR003340B3 DNA binding domain
SMARTSM010195.5E-1810106IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112169263IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-18173261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-18173262IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-17173262No hitNo description
SMARTSM010193.7E-9175263IPR003340B3 DNA binding domain
PfamPF023621.2E-14179261IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDSPWGGPRF FKILLQHNIE ANYMLIPKKF AKEHCRELSN QIILKVPNGE AWPVELVRDD  60
EAKGGLVWFG KGWQKFSERY CFRHGHFLLF ELLHNSSFLV LIFNRTAAEI DYSKQDWELA  120
QTETMLESAD VATDVAGKGE NLSSTKKTPV VVSKKLSSQR ASSSAAANVN VLPSFKKVIN  180
RSCPAVPMKF VEKYVTKSSE EMVELKVDGE SWAVKLKIYQ QASYCQLSEG WIQFAKDNNL  240
KAGDTCTFVL ASATSFNVHI SRC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025913
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100259130.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-19B3 family protein