PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025829
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 320aa    MW: 35513.3 Da    PI: 6.788
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025829genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.57.6e-18216250135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Lus10025829 216 CLHCGSDKTPQWRTGPMGPKTLCNACGVRYKSGRL 250
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.1E-8119303IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.688210246IPR000679Zinc finger, GATA-type
SMARTSM004015.2E-16210260IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-14211272No hitNo description
Gene3DG3DSA:3.30.50.104.5E-14214248IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.31E-15215266No hitNo description
PfamPF003201.1E-15216250IPR000679Zinc finger, GATA-type
PROSITE patternPS003440216241IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEPSDFFMAA YYNTSVVHST NFLPTETNPT ADHANFAVDD LLDFPTDDDA IMTDGFFDNL  60
AKNCDSPAFT PNDSSNSSST TSAGYQSIAD SHFSSELCVP YDDMAELEWL SNFVDDTSFS  120
TDHQTLQTNL HMLPGSKPEP MGRNATTTNN NNSMFQADAP LPGKARSKRS RIAPGNWTTR  180
LLHLTPSIKG AFKKKQESPN PNQNCSGSDS STLRRCLHCG SDKTPQWRTG PMGPKTLCNA  240
CGVRYKSGRL VAEYRPAASP TFVPAKHSNS HRKVLELRRQ KEMHMVQQEQ FLNQSSGMFG  300
DQYLINHHHT DGHNFRHVI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025829
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021643253.11e-118GATA transcription factor 9-like
SwissprotO826323e-69GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A2C9W2821e-117A0A2C9W282_MANES; GATA transcription factor
STRINGLus100258290.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-67GATA transcription factor 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]