PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025669
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 398aa    MW: 43859.4 Da    PI: 7.4547
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025669genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3491.1e-15441271098
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  vl+++ l lp +f+++hg++   + t +l  ++g sWev++  +k+++  ++l kGW+eFv+ + +  g f+vF + gr+ef  +v++f+
  Lus10025669  44 VLQEQKLKLPLHFVRTHGEE--LGSTAKLSLQNGCSWEVTV--EKGQNDdVWLMKGWSEFVERHSISNGFFLVFDFLGRNEF--KVQIFN 127
                  677888***********955..77799999999********..7766666*************************9999999..999886 PP
2B346.85.3e-153033841799
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++p +f+++h   + +   +tl +++ ++W+v     +++ g+ +++ GW +F k+n L + D+++F+l+ ++e+ l+v+vf++
  Lus10025669 303 TIPASFIRNHIRGEWK--SVTLVNQEQQRWDVDTEKnTNSAGGLLMGYGWTHFHKDNSLGSADVCLFQLVPDQERLLRVSVFSA 384
                  8*******99434445..69**************663555555***************************98787799999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-1930131IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.56235129IPR003340B3 DNA binding domain
CDDcd100172.06E-1535127No hitNo description
Gene3DG3DSA:2.40.330.102.4E-2035130IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.5E-1236129IPR003340B3 DNA binding domain
PfamPF023621.1E-1243127IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-15279384IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-13281383IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-9283382No hitNo description
PROSITE profilePS5086311.773287385IPR003340B3 DNA binding domain
SMARTSM010196.1E-5296385IPR003340B3 DNA binding domain
PfamPF023621.1E-12303384IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAEAGVPLSG SAATAAANFP DQQLPSPIMH KPYLSFFRVI LPCVLQEQKL KLPLHFVRTH  60
GEELGSTAKL SLQNGCSWEV TVEKGQNDDV WLMKGWSEFV ERHSISNGFF LVFDFLGRNE  120
FKVQIFNLTT CSIHYPESDE KKGQQEDEQE QASSAKCSVV VISGDEENGE DSSRGDCEFV  180
ESDRSDPELG RSRKRIAKRR RKKSLPNKKA AASSSSGFES ETCKHQDSQS GETESDQLLK  240
LVKSRGIYTS AKFPSTLCKM YNQCGKGVKA AAALQLIANP KTPCFIAVMS MRGDSTQRVM  300
TPTIPASFIR NHIRGEWKSV TLVNQEQQRW DVDTEKNTNS AGGLLMGYGW THFHKDNSLG  360
SADVCLFQLV PDQERLLRVS VFSASSAPSS ASSNAAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190202RSRKRIAKRRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025669
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100256690.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-20B3 family protein