PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10025534 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 250aa MW: 27549.3 Da PI: 4.9442 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.9 | 5.1e-15 | 17 | 110 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+k+ s l ++ l +p kf++e+g++ + tle +sg +Wev l +k +++ + +GW++F+k L+ g f++F + gr++f v + Lus10025534 17 FIKIIFESTILDKK-LKIPSKFISEFGQQLVGCAAATLEAPSGDKWEVGL--EKDRQGfvWFCNDGWERFAKFYTLEHGHFLLFGYRGRTDF--SVVI 109 66777777777776.***********88888999****************..888888556788***********************99999..7776 PP E CS B3 97 f 97 + Lus10025534 110 C 110 6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.63E-14 | 13 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.06E-12 | 16 | 111 | No hit | No description |
PROSITE profile | PS50863 | 10.644 | 16 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-15 | 16 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.3E-12 | 17 | 111 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-8 | 17 | 113 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.44E-6 | 179 | 242 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 7.6E-4 | 186 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
MAASSSQARR GEEVIRFIKI IFESTILDKK LKIPSKFISE FGQQLVGCAA ATLEAPSGDK 60 WEVGLEKDRQ GFVWFCNDGW ERFAKFYTLE HGHFLLFGYR GRTDFSVVIC DIYAAEIPYP 120 TLSFPARVEI EHEEEDSLPI SLESLSVDAA AANEKAKSPM VDDSAGSYDA SEDPSGSELS 180 SFKIRIPPSY LNARQRVEVK LMVGNKVWPV RAGLGRGISV KLASGCIGFA KENSLEVEDV 240 CVRADRNIP* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10025534 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | Lus10025534 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18960.1 | 7e-20 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10025534 |