PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025507
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 295aa    MW: 33072.8 Da    PI: 6.2641
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025507genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.26.9e-1416111198
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  ffk+   s  l ++ l++p+kf+++  g++  +    tle + g +Wev l  ++ +++   +  +GW++F+k   L+ g f++F+++grs+f   v 
  Lus10025507  16 FFKIIFESTILDKK-LRIPRKFISTEfGQQLLGCDAATLEVPIGDKWEVGL--ERDRQGfvWFCNDGWEKFAKFYSLDYGHFLLFEYKGRSDF--SVV 108
                  78888888888887.*******988865555566799**************..888777556789****************************..777 PP

                  EE- CS
           B3  96 vfr 98 
                  +++
  Lus10025507 109 ICD 111
                  776 PP
2B351.12.4e-16197292198
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                  f+ + + s+  ++++ ++p +f++eh  + + e++++ +     ++W v++  r  s+r +++++GW +F+++n Lk gD++vFk+  +  e +++v+
  Lus10025507 197 FEIKIKASHLCSRQQRRIPLSFTKEHsFMREVEQVKMEV---GDNVWPVRV--RLASSRyVLIAAGWIRFAEDNSLKLGDVCVFKVLTTsPEVRMKVT 289
                  6667788999999*************9555556544444...55*******..66666637889*********************7766699999999 PP

                  EE- CS
           B3  96 vfr 98 
                  v+r
  Lus10025507 290 VIR 292
                  987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.08E-1411112IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1514111IPR015300DNA-binding pseudobarrel domain
CDDcd100172.62E-1215111No hitNo description
PROSITE profilePS5086310.96915113IPR003340B3 DNA binding domain
SMARTSM010196.9E-1216113IPR003340B3 DNA binding domain
PfamPF023627.9E-1216111IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-16190292IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-17192292IPR015300DNA-binding pseudobarrel domain
CDDcd100174.26E-16195292No hitNo description
SMARTSM010191.2E-9197294IPR003340B3 DNA binding domain
PfamPF023629.0E-14197292IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266197294IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MASSSQAKHE EKVIRFFKII FESTILDKKL RIPRKFISTE FGQQLLGCDA ATLEVPIGDK  60
WEVGLERDRQ GFVWFCNDGW EKFAKFYSLD YGHFLLFEYK GRSDFSVVIC DISATEIVYP  120
TLSNVGRAVG IEHADSLPLE IFCEVDATAA NEKGKSPMVD DSAGNVSKAE TVINEEKEGT  180
NLDDASGNLF GSGHPSFEIK IKASHLCSRQ QRRIPLSFTK EHSFMREVEQ VKMEVGDNVW  240
PVRVRLASSR YVLIAAGWIR FAEDNSLKLG DVCVFKVLTT SPEVRMKVTV IRGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025507
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100255070.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.17e-23B3 family protein