PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025506
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 134aa    MW: 15405.7 Da    PI: 7.9633
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025506genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.72.1e-1313109197
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  ff +  +s   +++ l++p+kf++e+  +    ++ t tle + g +W+v l  ++  +r   +   GW++F++   L+ g  + F+++g+s f+ v+
  Lus10025506  13 FFRIIFQSTIIEKK-LMIPRKFITEFghQ-LFGCGDTATLEVPIGDKWKVGL--ERDTQRfvWFCNHGWERFAEFYSLDYGHCLHFEYKGSSVFSVVI 106
                  56666677777776.***********642.235889****************..888888656678************************99997776 PP

                  EEE CS
           B3  95 kvf 97 
                    +
  Lus10025506 107 CTI 109
                  655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-167107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-179107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.13712110IPR003340B3 DNA binding domain
CDDcd100177.05E-1212107No hitNo description
SMARTSM010191.1E-1013112IPR003340B3 DNA binding domain
PfamPF023623.7E-1014110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MAASSRQEEV NRFFRIIFQS TIIEKKLMIP RKFITEFGHQ LFGCGDTATL EVPIGDKWKV  60
GLERDTQRFV WFCNHGWERF AEFYSLDYGH CLHFEYKGSS VFSVVICTIS KAEIAYPTLS  120
FPAANVSLLR TSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025506
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100255065e-96(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-20B3 family protein