PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025447
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 792aa    MW: 87701.1 Da    PI: 4.3167
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025447genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-08283302626
                  -SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                  C+ffa+ G+C +G++CkF H+
  Lus10025447 283 CDFFAK-GWCIRGSSCKFLHV 302
                  ******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.87E-6276301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68277304IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4277303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-4281301IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6282302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MAPSTSIPAR SPDLSRNDSD SSVELEEVEE YEEVEEDDEL EEEEVEEEEE VVEEEVEEVE  60
EEEEEEEEEA EEVEEYEEVE EDEEEEEEEE KVEEIQEKGN EVLASDQEAN EKTQDTNQDM  120
GCEQNEGVSV SQSVDMECDE DEVISVSITV PLVSKVAAIP SLIVEDVGCN FALPSRPLAL  180
LATQGDDSVI NGGESKHLEG GKESNALGNV KNHVCEDERL ATKPLEDLSP EVGDNVDMIP  240
ELVKHATVLS DDEIKQPDSR SRIRSASPDP ELNNAHKRQA IVCDFFAKGW CIRGSSCKFL  300
HVKNKTSNSD GKAEGDSAVP SSSKDQVNEG STSTRPIGRL PDPAKQTFSS TRKDAITSRF  360
SFDSQMAAQM GGKPILSSLQ GEDLSSGIPH KSFRSLASNG ASVFSTLMKD VRTENLARGW  420
PPNEHGSLLS PLNGGNSFLL NNRLLPENRY SSSGLDLKSR LYNDKSSSSL FNSFDNSAHL  480
WSAYMDDDCV GSTSGSGRKP IVSCDYWEPS VPFQPSFLIT PVKSSPAREY DPLRDSIDSP  540
NGIVKTFEFS FINNRNSTRN APNQTVKDHN FPSRTIGHEV NDERSSIPHH NRFHGSTSDN  600
NCGAPGKESF KHGVAMDVDD LADDQSGTMP KEEIVSVSNH VDADHKPRSD GSRCRNKADS  660
MDGDGKMDQE VHKESKYPRH FRTALIGLVK ELLKPTWREG HLSKDAHNTI VRKSSDKVLS  720
TMQPHQVPTT PESIKHYLQS SRPKLEKLIE VSLSKVLENS RVLELNLSEL FITFLFSLSG  780
ICFQVWEILT C*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025447
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4613950.0GQ461395.1 Linum usitatissimum clone LU0CT0D18 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100254470.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.14e-35C3H family protein