PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10025232 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 108aa MW: 12062.6 Da PI: 8.7413 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.4 | 4.2e-07 | 69 | 107 | 1 | 39 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgL 39 r+k++++t++q++ L + F++++++ e++ +LA+k+gL Lus10025232 69 RCKKRRLTASQVQFLDRSFKNENKLGPERKIQLANKIGL 107 678889******************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.34E-6 | 55 | 107 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-7 | 60 | 107 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.4E-4 | 69 | 107 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.58E-4 | 71 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 108 aa Download sequence Send to blast |
MASENSSALA AASTTSLTGS HPFPPLSTVK FQTAARQMVE YENDRNFFNP MVKEELYCDE 60 DFENGSSPRC KKRRLTASQV QFLDRSFKNE NKLGPERKIQ LANKIGL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10025232 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | Lus10025232 | 1e-74 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01470.1 | 6e-11 | homeobox 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10025232 |