PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10025118

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 318aa MW: 36770.6 Da PI: 7.0795

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10025118	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	146.6	1.3e-45	17	145	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 pGfrFhPt+eelv++yLk+ v g+kl+l +v+k ++iy ++P+dLp+++k +e+ewyfF++r++k +g+r+nr+t++g+Wkatg+d+++ + Lus10025118 17 PGFRFHPTEEELVDFYLKNMVFGNKLSL-DVMKYLNIYLYDPNDLPRMAKIdGEREWYFFVPRERK--NGSRPNRVTEKGFWKATGSDRKIWRMsesd 111 9************************9.99***********644443677****998..689****************9987788 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 k++++g++ktLvfykgrap+g+ktdWvm+eyrl Lus10025118 112 aKRQHIGVRKTLVFYKGRAPRGTKTDWVMNEYRL 145 77788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	51.519	15	163	IPR003441	NAC domain
SuperFamily	SSF101941	4.84E-51	16	163	IPR003441	NAC domain
Pfam	PF02365	2.0E-25	17	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MDDITNELSS HHKFGLPGFR FHPTEEELVD FYLKNMVFGN KLSLDVMKYL NIYLYDPNDL 60 PRMAKIDGER EWYFFVPRER KNGSRPNRVT EKGFWKATGS DRKIWRMSES DAKRQHIGVR 120 KTLVFYKGRA PRGTKTDWVM NEYRLPHSST IHKDIVLCKI YRKATSMRVL EQRAFQEEHQ 180 QTFMNNTTAS SSSLETNMSM SSFFSNPHQQ EGNPVVLHQT PGAAEMKIEA DDPFTDNNIQ 240 TAHYDGYEYD YGGGFNTVPS CSLQQQFIPG EGKLQPLKLP ELQVPMFSMD LSQLDAFWLT 300 SPWLNQNLTP LANLLNF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-43	17	168	19	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-43	17	168	19	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-43	17	168	19	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-43	17	168	19	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-43	17	166	22	171	NAC domain-containing protein 19
3swm_B	1e-43	17	166	22	171	NAC domain-containing protein 19
3swm_C	1e-43	17	166	22	171	NAC domain-containing protein 19
3swm_D	1e-43	17	166	22	171	NAC domain-containing protein 19
3swp_A	1e-43	17	166	22	171	NAC domain-containing protein 19
3swp_B	1e-43	17	166	22	171	NAC domain-containing protein 19
3swp_C	1e-43	17	166	22	171	NAC domain-containing protein 19
3swp_D	1e-43	17	166	22	171	NAC domain-containing protein 19
4dul_A	1e-43	17	168	19	170	NAC domain-containing protein 19
4dul_B	1e-43	17	168	19	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10025118

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021609932.1	5e-99	NAC transcription factor 29-like
Swissprot	Q10S65	1e-72	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A0M4G3P0	4e-97	A0A0M4G3P0_MANES; NAC transcription factors 31
STRING	Lus10025118	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6214	32	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	9e-83	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	Lus10025118

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]