PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024753
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 591aa    MW: 64717 Da    PI: 6.5117
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024753genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.22.7e-22114214299
                  EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                   kvlt sd+++ g +++p+ +a+++         ++ +  tl++ d +g +W++++iyr++++r++lt+GW++Fv++++L +gD+v+F+  ++ ++e+
  Lus10024753 114 AKVLTASDANNGGGFSVPRFCADSIfpplnydADPPVQ--TLSVSDVHGIKWNFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVLFM--KNFRGEM 207
                  699*******************999*****96444444..9************************************************..6688999 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++v+r+
  Lus10024753 208 FIGVRRA 214
                  9**9986 PP
2Auxin_resp76.85.6e-26263346283
   Auxin_resp   2 ahaastksvFevvYnPra.stseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                   ++a+++ +FevvY+Pr+ s s+Fvv+++ ve+al++ +s G+R+kma+e+ed s+ ++ +Gtv++ +      W++S+Wr+L+
  Lus10024753 263 TERAAQGLPFEVVYYPRSwSFSDFVVNADVVEAALSMFWSSGTRVKMAVESEDLSRATWfQGTVASATVPGCGPWQGSPWRMLQ 346
                  578999***********7477************************************************999**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.15E-30105231IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-32112220IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.182113215IPR003340B3 DNA binding domain
SMARTSM010192.9E-16113215IPR003340B3 DNA binding domain
PfamPF023622.4E-20114214IPR003340B3 DNA binding domain
CDDcd100172.36E-18115213No hitNo description
PfamPF065074.9E-23263346IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MVDRRIWQSC AGSSIHIPTL NSRVYYFPQG HLEQSSSSTL PFLSSLVLSR PMILCRLSSI  60
QFLADPVTDE VYVKLFLHPL DPSSLNAAAL PLLEPSPTAA SAAAANNDGI MAYAKVLTAS  120
DANNGGGFSV PRFCADSIFP PLNYDADPPV QTLSVSDVHG IKWNFRHIYR GTPRRHLLTT  180
GWSKFVNSKK LIAGDSVLFM KNFRGEMFIG VRRAARSNNA ANFARWRDDF GTGGDGKVKL  240
KEDGCSRTSA RGMLSPETVA EVTERAAQGL PFEVVYYPRS WSFSDFVVNA DVVEAALSMF  300
WSSGTRVKMA VESEDLSRAT WFQGTVASAT VPGCGPWQGS PWRMLQIKWD EPEVLQSAQR  360
ISPWRVEFVS TNSSLGTGIP PAKKLRYPDK SEFLIDGERD LRFPLSGLGN STMAQMNQPL  420
LSYNNFPAGM QGARHYSFPP FELSNSVSDN GLQIGADTCV TNIMVPKMSS VSTELNIGSS  480
QSENLSPDSQ SSVQSFSTEL VGNQGCTSRN WGTSSFQLFG KMIHMNQAVE RGCDVVSCLE  540
DENAKKCKDN QGVNQLLDLS LTSSYTELLN KIDVQCQRSA GLEAYEQSIL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldx_A1e-67437321359Auxin response factor 1
4ldx_B1e-67437321359Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024753
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012078139.10.0auxin response factor 17
TrEMBLA0A067KCM50.0A0A067KCM5_JATCU; Auxin response factor
STRINGLus100247530.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-159auxin response factor 17