PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10024320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ARF | ||||||||
Protein Properties | Length: 695aa MW: 76357 Da PI: 6.1687 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.8 | 2e-23 | 156 | 257 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae+ +++++ ++l+++d++ + W++++iyr++++r++lt+GW+ F +++Lk+gD+v+F ++++ +l Lus10024320 156 FCKTLTASDTSTHGGFSVPRRAAEKLfpqldyTMQPPS-QELIVRDLHDNAWTFRHIYRGQPKRHLLTTGWSLFIGSKRLKAGDSVLFI--RDEKSQL 250 99*********************999****99555544.59************************************************..4577778 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ Lus10024320 251 LVGIRRA 257 *****97 PP | |||||||
2 | Auxin_resp | 115.3 | 5.5e-38 | 282 | 365 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s F+++YnPra++seFv+++++++ka++ ++v+vGmRf m+fete+s++rr++Gt+vgvsdldp+rWp+SkWr+L+ Lus10024320 282 AAHAAASRSSFTIFYNPRACPSEFVIPLANYRKAVYgTQVAVGMRFGMMFETEESAKRRYMGTIVGVSDLDPLRWPGSKWRNLQ 365 79**********************************9*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.58E-46 | 143 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.7E-41 | 152 | 270 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.88E-22 | 155 | 256 | No hit | No description |
SMART | SM01019 | 3.8E-22 | 156 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-21 | 156 | 257 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.985 | 156 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.6E-33 | 282 | 365 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 26.02 | 581 | 665 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.5E-8 | 581 | 666 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.09E-8 | 594 | 660 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MASVEEKGKA GVGLLGAGAQ IPATSTLLDE MKLFKEIQDH SAAAGSRKAI NSELWYACAG 60 PLASLPHVGS LVYYFPQGHS EQVAVSTKRN ATSQIPNYPN LPSQLLCQVH NVTLHADRDT 120 DEIYAQMSLQ PVNSDKDIFP VPDFGLKLSR HPAEFFCKTL TASDTSTHGG FSVPRRAAEK 180 LFPQLDYTMQ PPSQELIVRD LHDNAWTFRH IYRGQPKRHL LTTGWSLFIG SKRLKAGDSV 240 LFIRDEKSQL LVGIRRANRQ QSTLPSSVLS ADSMHIGVLA AAAHAAASRS SFTIFYNPRA 300 CPSEFVIPLA NYRKAVYGTQ VAVGMRFGMM FETEESAKRR YMGTIVGVSD LDPLRWPGSK 360 WRNLQVEWDE PGCSDKPNRV SSWDVETPES LFIFPSLTSG LKRPMHSGYL GGETEWGNLI 420 KRPLVWLPDG GNTSLAYPPF SDSGSDRLLN MLMKPPAFNY PGLSSPSFQD ISAAKGPSVE 480 DANKTLNTPL PFRATVEEWP SQPPDTDFHN LSSDCLLGNF SSSQDVQSQI TSVSLADSQA 540 FSQQEFPDSS GGTSSSNVEF DKGGNLLQTN SWQPVVPPRV RTYTKVQKAG SVGRSIDVSS 600 FKNYEELCSA IECMFGLGGL LNNPRESGWK LVYVDYENDV LLIGDDPWEE FVGCVRCIRI 660 LSPQEVQQIS EEGMKLLNNA NMQQGTSSLA GQGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 390 | 5 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10024320 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023772550.1 | 0.0 | auxin response factor 5-like | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A022RF32 | 0.0 | A0A022RF32_ERYGU; Auxin response factor | ||||
STRING | Lus10024320 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8991 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10024320 |