PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024305
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family SRS
Protein Properties Length: 357aa    MW: 38499 Da    PI: 7.4042
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024305genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702219.38.1e-681212783153
       DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel........kskkqsalsstkls 92 
                  sg+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer qqlaa+++++++ +++ + +++ ++        + +++s+  st+++
  Lus10024305 121 SGGINCQDCGNQAKKDCLHMRCRTCCKSRGFNCQTHVKSTWVPAAKRRERLQQLAALQHQQQQPQQQTSDHQPLQQhfrgenpkRLRESSTRLSTHVA 218
                  7899****************************************************999888777555544444443444333223333333444444 PP

       DUF702  93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                  ++ +  e+   ++P+ev+s+avfrcv+vssvddgee+laYqtav+i GhvfkGiLydqG+ 
  Lus10024305 219 TGATGLEVG-GHFPSEVNSAAVFRCVKVSSVDDGEEQLAYQTAVNIRGHVFKGILYDQGPT 278
                  444443333.34***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.2E-65123278IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.8E-28125167IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.6E-27229277IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAGWFYLSGG REAASSKPEE EEEEEEEKQE NNSLYLFRNE EIQSNNNNHH HPHHHQGSST  60
SRSGFGFEIW PQQYYHQQQQ QNQASIYALA AAAAASRSSD DSSRSGGGGI MMRSSGGGGS  120
SGGINCQDCG NQAKKDCLHM RCRTCCKSRG FNCQTHVKST WVPAAKRRER LQQLAALQHQ  180
QQQPQQQTSD HQPLQQHFRG ENPKRLRESS TRLSTHVATG ATGLEVGGHF PSEVNSAAVF  240
RCVKVSSVDD GEEQLAYQTA VNIRGHVFKG ILYDQGPTTT HHHHHHPHHQ SSSTPLHLMT  300
AGTSGGGGGG AGTSGGEVGG SNNPVGSGSM IDPASLYPAP LNAFIAGTQF FPPPRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024305
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466169.11e-101PREDICTED: protein SHI RELATED SEQUENCE 5-like
TrEMBLA0A0D2QC221e-100A0A0D2QC22_GOSRA; Uncharacterized protein
STRINGLus100243050.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.14e-60SHI-related sequence 5