PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10024252 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 543aa MW: 62084.5 Da PI: 5.5264 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 266.7 | 8e-82 | 140 | 523 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn...sseelaalklfsevsPilkfsh 95 e Ll++Ae v ++++ a alL+ l+s++g+p+qRl ++f +AL+ r++r ++ + ++ p s+ ++++ +++e+a++ + P++++ h Lus10024252 140 AEYLLAAAERVGDKQFPHAAALLNLCDALSSKTGNPVQRLGHCFSRALRDRISRdMGRGEVDNKPNSPPDPHDsmlTTTEFAIQGMERGEMPMFQVPH 237 5789**************************************************8888777777666666655565555666666677889******* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak..r 185 l+ qaIle v +++++H+iD+ i +G +W+aL+q L sR+ +++p lRiT+v+ ++ + + +++etg rL++fA+++ +pf+f+++v++ r Lus10024252 238 LVGIQAILENVTTSNKIHVIDLRIRNGQHWVALIQGLVSRRsdptNPQPveLLRITAVETSSDECSSSIRETGCRLSDFAKAMSIPFRFEIVVMEdnR 335 **************************************99977764455558********9999***************************9776468 PP GRAS 186 ledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.ee 281 + ++++++ ++ +E+l+V + l rll ++ + e v+k++k+++P+v++ ve ea++ns++F +rf+eal +ysa+f+ +e p+ + + Lus10024252 336 WIGFKPDRFGLNWdEESLVVYSEWGLRRLLTRPREAER----VVKTLKQMKPRVMITVEVEANLNSPNFSARFVEALFHYSAVFENVECCNPSRDcPN 429 8899*******98899**************66666666....*********************************************988888777** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 r ++E ++lg +i+n++a+eg+er r + e Wr+ ++++G+++++ se a+ qakl ++k+ ++ y++ + +s+vlg k+ +++ vS W+ Lus10024252 430 RETIETVYLGDQISNILATEGDERYLRSVKIEVWRKFFKQFGMEEIEPSEAAMHQAKLFMEKYVsEQHYTIGMDGKSMVLGFKTTAMICVSTWK 523 ***************************************************************98888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.731 | 113 | 502 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.7E-79 | 140 | 523 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MDQFSKSTPD FNYVDHDQWL RLQFSPSFPL LDHHEMDDGY FSSQRRSNFD LLHKYGFQPV 60 TESVPPPQEK STAALIEQLE EEEEEMNEVP LSAEEVVRIA GMRIVQHSSR KAGSPSMLQI 120 PFDPSLSYLS HQDLKNVELA EYLLAAAERV GDKQFPHAAA LLNLCDALSS KTGNPVQRLG 180 HCFSRALRDR ISRDMGRGEV DNKPNSPPDP HDSMLTTTEF AIQGMERGEM PMFQVPHLVG 240 IQAILENVTT SNKIHVIDLR IRNGQHWVAL IQGLVSRRSD PTNPQPVELL RITAVETSSD 300 ECSSSIRETG CRLSDFAKAM SIPFRFEIVV MEDNRWIGFK PDRFGLNWDE ESLVVYSEWG 360 LRRLLTRPRE AERVVKTLKQ MKPRVMITVE VEANLNSPNF SARFVEALFH YSAVFENVEC 420 CNPSRDCPNR ETIETVYLGD QISNILATEG DERYLRSVKI EVWRKFFKQF GMEEIEPSEA 480 AMHQAKLFME KYVSEQHYTI GMDGKSMVLG FKTTAMICVS TWKFVQLARL ASTKRDLRVE 540 FY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-30 | 158 | 523 | 22 | 375 | GRAS family transcription factor containing protein, expressed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10024252 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10024252 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 2e-48 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Lus10024252 |