PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10023966

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 322aa MW: 37012 Da PI: 8.8885

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10023966	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	145.8	2.3e-45	17	151	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 pGfrFhPt+eelv++yLk+ v gk+++l +vik ++iy ++P+dLp+ k +e+ewyfF++r++k +g+r+nr+t++g+Wkatg+d++ Lus10023966 17 PGFRFHPTEEELVNFYLKNMVFGKNFSL-DVIKYLNIYLYDPNDLPSmstfsvmaK--IdGEREWYFFVPRERK--NGSRPNRVTEKGFWKATGSDRK 109 9************************9.99***********5477776422..24678****998..689***************** PP NAM 92 vlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + k++++g++ktLvfykgrap+g+ktdWvm+eyrl Lus10023966 110 IWRMsesdaKRQHIGVRKTLVFYKGRAPRGTKTDWVMNEYRL 151 998778877788**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-51	14	169	IPR003441	NAC domain
PROSITE profile	PS51005	51.014	15	169	IPR003441	NAC domain
Pfam	PF02365	2.4E-25	17	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MADITHELSS QQKFGLPGFR FHPTEEELVN FYLKNMVFGK NFSLDVIKYL NIYLYDPNDL 60 PSMSTFSVMA KIDGEREWYF FVPRERKNGS RPNRVTEKGF WKATGSDRKI WRMSESDAKR 120 QHIGVRKTLV FYKGRAPRGT KTDWVMNEYR LPHSSTIHKD IVLCKIYRKA TSMRVLEQRA 180 LMEEHQQTFM NSSTTASSSS LDLDTNMSMS SSFSNPHQQE GNPVLHQTPV AADMKIEAFT 240 DNNIQSANYD GYGYDYGGFN KVPSCSLQQQ FIPGEGKLQP FKLPELQVPK ISMDWSQLDA 300 FWLTSPWLNQ NLTPLANLLN L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-45	17	172	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-45	17	172	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-45	17	172	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-45	17	172	19	168	NO APICAL MERISTEM PROTEIN
3swm_A	4e-45	17	172	22	171	NAC domain-containing protein 19
3swm_B	4e-45	17	172	22	171	NAC domain-containing protein 19
3swm_C	4e-45	17	172	22	171	NAC domain-containing protein 19
3swm_D	4e-45	17	172	22	171	NAC domain-containing protein 19
3swp_A	4e-45	17	172	22	171	NAC domain-containing protein 19
3swp_B	4e-45	17	172	22	171	NAC domain-containing protein 19
3swp_C	4e-45	17	172	22	171	NAC domain-containing protein 19
3swp_D	4e-45	17	172	22	171	NAC domain-containing protein 19
4dul_A	4e-45	17	172	19	168	NAC domain-containing protein 19
4dul_B	4e-45	17	172	19	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10023966

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ884810	1e-42	HQ884810.1 Linum usitatissimum clone Contig627 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021609932.1	6e-97	NAC transcription factor 29-like
Swissprot	Q10S65	7e-75	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A2P6PT44	3e-95	A0A2P6PT44_ROSCH; Putative transcription factor NAM family
STRING	Lus10023966	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6214	32	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	3e-88	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	Lus10023966

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]