PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023684
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 196aa    MW: 22031.3 Da    PI: 10.3022
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023684genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.83.5e-19116150135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Lus10023684 116 CQHCGSEKTPQWRAGPMGPKTLCNACGVRYKSGRL 150
                  *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.347110146IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-17110160IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-15112174No hitNo description
Gene3DG3DSA:3.30.50.104.5E-15114148IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.89E-14115163No hitNo description
PROSITE patternPS003440116141IPR000679Zinc finger, GATA-type
PfamPF003206.5E-17116150IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDYPEEELEW ISNKEAFPAL ETFVDIISEQ PGSLPKQNSP VSVLENSITS SQSNGSSGSG  60
FIMSYCRSLQ PPVKKARSKR HLKCRRDLQD PRQCWWNHDN LKSSRKPAAS KIGRKCQHCG  120
SEKTPQWRAG PMGPKTLCNA CGVRYKSGRL VPEYRPANSP TFSMEMHSNS HRKVLEMRKK  180
KQVLGVVVVK PFEKG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023684
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8298471e-138EU829847.1 Linum usitatissimum clone LU0012H03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012092669.17e-90GATA transcription factor 1
SwissprotQ8LAU98e-51GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A067JC772e-88A0A067JC77_JATCU; Uncharacterized protein
STRINGLus100236841e-144(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-51GATA transcription factor 1