PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023159
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 300aa    MW: 33061.1 Da    PI: 4.2135
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023159genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-1870123356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++  q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Lus10023159  70 KKRRLSVVQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 123
                  45579999*********************************************9 PP
2HD-ZIP_I/II1261.7e-4069161193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls  qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk + ++L+ ++e+L +++++
  Lus10023159  69 EKKRRLSVVQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKLNYDSLKLNNESLVKQIRD 161
                  69**************************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.99E-1959127IPR009057Homeodomain-like
PROSITE profilePS5007116.7365125IPR001356Homeobox domain
SMARTSM003891.4E-1768129IPR001356Homeobox domain
CDDcd000863.07E-1670126No hitNo description
PfamPF000461.8E-1570123IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-1972132IPR009057Homeodomain-like
PRINTSPR000318.1E-696105IPR000047Helix-turn-helix motif
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PRINTSPR000318.1E-6105121IPR000047Helix-turn-helix motif
PfamPF021832.6E-16125166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MKRSLGSTDS FGALVSTIAT SEEKHGSPMN SSGGGHLYGM LEEEDGGVGG GGGEEYSAGG  60
CGGSGGLGEK KRRLSVVQVK ALEKNFEVEN KLEPERKVKL AQELGLQPRQ VAVWFQNRRA  120
RWKTKQLERD YGVLKANYDS LKLNYDSLKL NNESLVKQIR DLKSKLAADG DDDEIHAAGD  180
EIAEEEEDRD DDVNLHPAEI VQELTNSYEE EEEEEEEAPP LIFSRDGSSD SDSSAILNDE  240
YNYGYACPPP PPAFTAAKPY NQTQLLVKVE EHNFFGSEDQ EAACNFFSDE QAPSLNWWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023159
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306291.23e-81homeobox-leucine zipper protein ATHB-6 isoform X1
TrEMBLA0A1I9W0132e-81A0A1I9W013_POPTO; Homeobox protein 16
STRINGLus100231590.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.12e-52homeobox protein 16