PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022965
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 358aa    MW: 39222.6 Da    PI: 4.3136
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022965genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.62.6e-15161531128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykv.ePwdL.pkkvkaeek......ewyfFskrdkkyatgkrknratk..sgyWkat 86 
                  lppG+rF+P++eelv  yL ++++g +l+   +  +  +d+y++ ePw++ p+ +++e +      ++y  +k +k++++++r  r++    g+W++t
  Lus10022965  16 LPPGYRFNPSEEELV-GYLFNHISGFSLQNIPFcpVVVCDLYSSaEPWEIwPS-CQSE-RfglpigDVYVITKLKKSKTSSTRLDRSVGisGGTWHQT 110
                  79*************.89999999999655343237777999766*****544.3332.223445578********9999******644449****** PP

          NAM  87 gkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   k k++ +     ++l gl k + + + ++p+  +  W++ ey++
  Lus10022965 111 SKVKKIEEVdcgAHKLCGLCKGFNYKNLTSPE--NGCWLLTEYTI 153
                  ******99887777889999999999766666..89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-1513169IPR003441NAC domain
PROSITE profilePS5100518.85816172IPR003441NAC domain
PfamPF023655.4E-1117153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEEEQVEQQP QHLQMLPPGY RFNPSEEELV GYLFNHISGF SLQNIPFCPV VVCDLYSSAE  60
PWEIWPSCQS ERFGLPIGDV YVITKLKKSK TSSTRLDRSV GISGGTWHQT SKVKKIEEVD  120
CGAHKLCGLC KGFNYKNLTS PENGCWLLTE YTISIDGGKT YSEEAICKLN HHKTSEGADP  180
QPPSTGKRKF DAAAGCSSQP SSKVPRICDG APTLSPDLIS LSASNDGVGY SSSSMTNIHN  240
TLPTNQSHNS ENEVGFNLDD DIWALLEEEI ELGSTGQQVQ SLVEPNQDLI SFSSDSSLNS  300
KVPIIDDDFI NRLSSPSYIP CSFDSDLGYE IDVLCSQNLP GSPFSYLQDL PISDFLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022965
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100229650.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.24e-11NAC domain containing protein 38