PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022943
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 1030aa    MW: 114573 Da    PI: 6.6053
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022943genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.3e-2398199199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l
  Lus10022943  98 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLIAGDSVLFI--RDEKQQL 192
                  99*****************************9445444.38************************************************..5688889 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  Lus10022943 193 LLGIRRA 199
                  ****997 PP
2Auxin_resp117.79.5e-39224307183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F+v++nPras+seFvv+++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g++dldpvrW++S+Wr+L+
  Lus10022943 224 AAHAAANNSPFTVFFNPRASPSEFVVPLAKYYKAVYsNQVSLGMRFRMMFETEESGTRRYMGTITGITDLDPVRWKGSQWRNLQ 307
                  79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-4389227IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-4189213IPR015300DNA-binding pseudobarrel domain
CDDcd100174.42E-2097189No hitNo description
PfamPF023623.9E-2198199IPR003340B3 DNA binding domain
PROSITE profilePS5086312.05598200IPR003340B3 DNA binding domain
SMARTSM010191.7E-2398200IPR003340B3 DNA binding domain
PfamPF065076.0E-34224307IPR010525Auxin response factor
PfamPF023095.6E-79141002IPR033389AUX/IAA domain
PROSITE profilePS5174526.929171001IPR000270PB1 domain
SuperFamilySSF542777.16E-7930995No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1030 aa     Download sequence    Send to blast
MGGGMEANKN KFIEDWGAAR ENLEHNFRWT RRNFALIGLF GVALPFLVYK GTVKEFADPE  60
TDEVYAQMTL QPVPSYDKEA LLRSDLTFRS SKPQPEFFCK TLTASDTSTH GGFSVPRRAA  120
EKIFPPLDFS MQPPAQELVA RDLHDNVWTF RHIYRGQPKR HLLTTGWSLF VSGKRLIAGD  180
SVLFIRDEKQ QLLLGIRRAN RQPTNLSSSV LSSDSMHIGI LAAAAHAAAN NSPFTVFFNP  240
RASPSEFVVP LAKYYKAVYS NQVSLGMRFR MMFETEESGT RRYMGTITGI TDLDPVRWKG  300
SQWRNLQVGW DESTVEERRN RVSVWEIEPV TAPFFICPPP FFISKRPRQP GMPDDDSSDL  360
DGMLKRSMPW LGDDILKDPG SLPGLSLVQW MNMQQTSSLA NTVQQTYMQS LPGSGLPNLA  420
GTADISRQLG GLSAPQVLQQ NNFQLTAPRL PQQAPQLDQF IKMPSLMNPM ASVVQVPDVV  480
QQPRQNLMNQ TPSTSQVQAS SIVQHQQPNQ SNQFVRNLSP SLQQQHSEMQ NFVPTQIPDQ  540
LNQHFQGSDN QLQIQLLQKL QQQQQQSLLA QQAGGQLPHL QDPQRQQLDA SQSFSRSVTP  600
NQMPQTVTSS LPQSNIVQQQ IAKGNNHQVD VRFSHLPQQS QKLQHQQTSL LPEVPGHIRV  660
PPCTTSNQLS TGMLNARAVT DEVPSCSTSP STNNCSNLIQ PMMNDIYPST GTLLSPGALD  720
TMPYAGGMFK NMQQKSDVKP SLNISKNQNQ GFFGVKGPTA QTDYLDTSSS TSVCLSQNDV  780
QLQQNNNVSY NSQPILMRGE TSQDEELQAD PRSNGVYGTG IDGQNQLGIH MHSDDLLTKS  840
MVGVLGKDFS NNLPSGEMLA NCANSNSKEP QQELSSSIVS QSFGVPDMAF NSIDSINDSS  900
FLNRSSWGAQ PQFQRMRTYT KVYKRGAVGR SIDITRYSGY DELKQDLARR FGIEGQLEDR  960
GRVGWKLVYV DHENDVLLVG DDPWEEFVNC VRCIKILSPQ EVQQMSLDGD FGNSVLPKQA  1020
CSSSDNGNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-13053328113388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022943
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876353.10.0auxin response factor 19-like
TrEMBLA0A2N9HN130.0A0A2N9HN13_FAGSY; Auxin response factor
STRINGLus100229430.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-164auxin response factor 19