PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10022789

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Trihelix

Protein Properties

Length: 285aa MW: 32244.2 Da PI: 5.7649

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10022789	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.1	3.4e-16	28	121	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...............rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W+++e+ +Li ++++++++ +r+ l++p+Wee+s ++ + +s +qC++k+e+l++ry+ + ++++ s++p+f+ Lus10022789 28 WSQEETVQLILIYQQKWHANNRRHLRAPQWEEISTAVadrcgghndadpltsVSPEPAKSGIQCRHKMEKLRRRYRSELPRASS------SNWPFFSL 119 ***********************************************9987777789*************99888775......69**99 PP trihelix 85 le 86 ++ Lus10022789 120 MD 121 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.2E-16	28	123	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MSSPSSPPPP PLPLTATTAA KKPQPITWSQ EETVQLILIY QQKWHANNRR HLRAPQWEEI 60 STAVADRCGG HNDADPLTSV SPEPAKSGIQ CRHKMEKLRR RYRSELPRAS SSNWPFFSLM 120 DSMERGPISP RPLSEYHGEP DEEEEEEEEE GEEDYQAVYN NKSRSINHIL RKPSVVNRFP 180 GNNYSGFLLQ AAAAAAEGGG KRKRGVEDEG NKEEEEGIGG LLVVDEVKKL IEKMKGVERK 240 KMEMVKETER WRMEMEKQRM EMMLASQRKI LQLIASSSAS DDDS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10022789

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ885977	1e-122	HQ885977.1 Linum usitatissimum clone Contig1909 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10022789	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10087	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	9e-27	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Lus10022789