PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022664
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 463aa    MW: 52121.7 Da    PI: 4.272
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022664genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS129.73.3e-40944613374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL +  ea+++g+ ela+ ++a +se +sp+gdp++Rl + + + L ++ a+           ++++    ++  +a+++f++++P+ +f+h++aN+
  Lus10022664  94 HLLKAYGEAMEAGQGELADVIMASVSEKVSPAGDPLERLGFNLSKDLYNKEAD---------YIEQEA---AKNFESAFRAFYQIFPYGRFAHFAANS 179
                  78888899*********************************988888888777.........233333...56778899******************* PP

         GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.............skeeleetgerLakfAeelgvpfefnvlvak 184
                  aI e++  + ++vHi Dfdi++G+QWp+ ++aLa    g  s+ +T+v  ++++             s  + ee++ rL +f +++g+++e++ +   
  Lus10022664 180 AIIESIPADvQTVHIFDFDIGEGVQWPPVIEALAG--MGNKSVTLTAVTWETETetesdledgdwwpSMWNFEEVKGRLMDFSDRVGLKMEIHGV--- 272
                  ******9999************************9..5778999****98777778999*******9999************************8... PP

         GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvk.sl..sPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklp 276
                  r+ dl+ ++ ++k +   + n+++ l ++ + ++      +e+L++   s+  s+ +v+  e     +  ++ ++ e f + + yy +l++s+e ++p
  Lus10022664 273 RIGDLKKKTKKFKLKQWCVFNCMILLPHMRRVRGREVI--SEFLSTAGeSIseSAGIVTRGEGGepWEEeSDVKLGEFFERNMVYYRSLLESIELSFP 368
                  9999*999999999***************966655555..9***99852442267899988876453332666788888889**************** PP

         GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF...kpvplsekaakqaklllrkvk.sdgyrve..eesgslvlgWkdrpLv 368
                  + +e+r+ +E  ++++ i++            +e  ++W e+ +ea     ++ ++s++  ++ak ++++ +   g r+    +++++vl W++ pLv
  Lus10022664 369 ELAEARMALECLFVAPYISS------------REWIRRWTEMTTEAVVavgEKWNVSKESLEEAKEMVKERQtAFGVRIGghGRENEMVLEWNGTPLV 454
                  ************88888763............23455666666665442227899*****************778888876567************** PP

         GRAS 369 sv.SaWr 374
                   v S Wr
  Lus10022664 455 RVrSIWR 461
                  7769997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.00166462IPR005202Transcription factor GRAS
PfamPF035141.1E-3794461IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MINPPPSFTD LQPSEDDDMD IIINTSIHHF SDQLSPDCSS DGLAMITLST EELLMNISDT  60
NNSDASPMET AISTDSLDIP SEETELGNQV SVFHLLKAYG EAMEAGQGEL ADVIMASVSE  120
KVSPAGDPLE RLGFNLSKDL YNKEADYIEQ EAAKNFESAF RAFYQIFPYG RFAHFAANSA  180
IIESIPADVQ TVHIFDFDIG EGVQWPPVIE ALAGMGNKSV TLTAVTWETE TETESDLEDG  240
DWWPSMWNFE EVKGRLMDFS DRVGLKMEIH GVRIGDLKKK TKKFKLKQWC VFNCMILLPH  300
MRRVRGREVI SEFLSTAGES ISESAGIVTR GEGGEPWEEE SDVKLGEFFE RNMVYYRSLL  360
ESIELSFPEL AEARMALECL FVAPYISSRE WIRRWTEMTT EAVVAVGEKW NVSKESLEEA  420
KEMVKERQTA FGVRIGGHGR ENEMVLEWNG TPLVRVRSIW RQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1211037821284GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022664
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046829.11e-139PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2K1XEP91e-138A0A2K1XEP9_POPTR; Uncharacterized protein
STRINGLus100226640.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-14GRAS family protein