PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022636
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 310aa    MW: 35975.6 Da    PI: 7.2325
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022636genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.41.8e-46161442128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 
                   pGfrFhPt+eelv++yL++ v gkk++l +vi  ++iy+++P+dLpk +k  +e+ewyfF++rd+k+  + r+nr+t++g+Wkatg+d+++ +    
  Lus10022636  16 LPGFRFHPTEEELVDFYLNNMVFGKKFSL-DVIGYLNIYRYDPKDLPKLAKInGEREWYFFVPRDRKHGGNGRPNRTTEKGFWKATGSDRKIWRLseP 112
                  59***************************.99***************633332678************************************886557 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++++gl+ktLvfy+grapkg ktdWvm+eyrl
  Lus10022636 113 KRQIGLRKTLVFYQGRAPKGIKTDWVMNEYRL 144
                  889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-5313163IPR003441NAC domain
PROSITE profilePS5100552.49115163IPR003441NAC domain
PfamPF023655.4E-2517144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MTDTIEMTPE QHQFSLPGFR FHPTEEELVD FYLNNMVFGK KFSLDVIGYL NIYRYDPKDL  60
PKLAKINGER EWYFFVPRDR KHGGNGRPNR TTEKGFWKAT GSDRKIWRLS EPKRQIGLRK  120
TLVFYQGRAP KGIKTDWVMN EYRLPDSSSP LPKEVVLCKI YRKATSLRVL EQRAAMEEEH  180
QQQHSQFSSP LDTSSPPLSM SSSFCGSSTT GPRQHQEEEE GPPHQMLLGP MEDRHMADFV  240
KREEADDDNP LTGHHHHHPS YDAKGIINRC NLLELQVPKF SMDWNQDQFW LASPWLHQNL  300
TPLANLLNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-4451669171NAC domain-containing protein 19
3swm_B5e-4451669171NAC domain-containing protein 19
3swm_C5e-4451669171NAC domain-containing protein 19
3swm_D5e-4451669171NAC domain-containing protein 19
3swp_A5e-4451669171NAC domain-containing protein 19
3swp_B5e-4451669171NAC domain-containing protein 19
3swp_C5e-4451669171NAC domain-containing protein 19
3swp_D5e-4451669171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022636
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023892647.11e-113NAC domain-containing protein 22
SwissprotQ10S655e-81NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A3N7EU841e-108A0A3N7EU84_POPTR; Uncharacterized protein
STRINGLus100226360.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62143251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.17e-90NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]