PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022414
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 492aa    MW: 55500.8 Da    PI: 6.7107
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022414genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS268.52.2e-821004721374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppset.sekn.sseelaalklfsevsPilkfsh 95 
                  lv+ Ll++Ae    +d e+a alL     l+s++g+ ++R++ yf+ AL++r+++ s+ ++++ +   e+ + ++ ++    ++   +   P++++++
  Lus10022414 100 LVHHLLNAAEETGRQDYEQAIALLDVCDSLSSKTGNHTERVVYYFAHALRERVYNeSGVKISSLVDEIEKlNVEEaMTAPSPIVASIYAKIPFYQVGQ 197
                  6899**************************************************977778887774444303222344444445669999******** PP

         GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                  l+  qaI+e+ve+++rvHiiD+ i +G+QW aL+qaLasR+ ++   l+iT+++s + +s++ ++etgerL  fA+++++p+ f+++v++++ +++ +
  Lus10022414 198 LAGVQAIVESVEKSKRVHIIDLKIRNGMQWTALMQALASRRkRDLEILKITALVS-SGSSEDLIHETGERLVTFAKSINIPLAFRTVVVTNMVQIDKK 294
                  **************************************98857788*********.5559999*********************************** PP

         GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                  +L+++p++++a+ + ++l++l  ++ +l+     ++ +++ ++P+v+vv+e ea+ +s +F +rf+e l +y+a fd++++ + +++ +++ +E ++l
  Lus10022414 295 RLHLDPKDVVAIFSEYALQHLIGKPNQLNA----LMTVIRYIRPTVMVVIETEANFSSLDFSNRFVEGLFHYAAYFDCVDTCFDNDDVNKMILESMFL 388
                  **********************88777777....**************************************************************** PP

         GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++++  ++ +e++e   r  t   Wr+ ++++ + ++ ls  ++++++ ll++++ ++  +v+ +  s+vlgWk+ p++s+SaW+
  Lus10022414 389 SEHLNGILEKEEKE-MTRSVTIDVWRKFFSQFWMLEAGLSPITMETVNQLLARFSsGEHCTVNMDGRSVVLGWKGTPMFSLSAWK 472
                  *************9.99**************************************88889************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.16374451IPR005202Transcription factor GRAS
PfamPF035147.5E-80100472IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MFHPGNPPLE TSHGDGQTFG ETNQQAMFSL ASVELLRSRV KETLIRKARE PTRSTPQKMS  60
LPDIIRTASV KFINNPSSTS ESGIIPSNEE EEAITKQIEL VHHLLNAAEE TGRQDYEQAI  120
ALLDVCDSLS SKTGNHTERV VYYFAHALRE RVYNESGVKI SSLVDEIEKL NVEEAMTAPS  180
PIVASIYAKI PFYQVGQLAG VQAIVESVEK SKRVHIIDLK IRNGMQWTAL MQALASRRKR  240
DLEILKITAL VSSGSSEDLI HETGERLVTF AKSINIPLAF RTVVVTNMVQ IDKKRLHLDP  300
KDVVAIFSEY ALQHLIGKPN QLNALMTVIR YIRPTVMVVI ETEANFSSLD FSNRFVEGLF  360
HYAAYFDCVD TCFDNDDVNK MILESMFLSE HLNGILEKEE KEMTRSVTID VWRKFFSQFW  420
MLEAGLSPIT METVNQLLAR FSSGEHCTVN MDGRSVVLGW KGTPMFSLSA WKFLLAKPLK  480
QTYKKKRLMD T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-3110647125378Protein SCARECROW
5b3h_A4e-3110647124377Protein SCARECROW
5b3h_D4e-3110647124377Protein SCARECROW
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022414
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100224140.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.12e-47GRAS family protein