PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022316
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family M-type_MADS
Protein Properties Length: 255aa    MW: 28281.1 Da    PI: 6.9402
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022316genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.32.7e-151148340
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                 i n+s r+ tf kR+ g++KK  ELS+LC+++++ i+ 
  Lus10022316 11 IANESARKATFKKRKRGLMKKVMELSTLCGIQACAIVN 48
                 89********************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.7E-17162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.797147IPR002100Transcription factor, MADS-box
CDDcd002661.63E-24286No hitNo description
SuperFamilySSF554552.22E-21298IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-7323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MTRKKVKQMY IANESARKAT FKKRKRGLMK KVMELSTLCG IQACAIVNNP FDEAQAPETW  60
PPTPVGVHQV LTRFKEMPEM DQRQNMINQK DFLKNRINKA VSQGKKYEDE NHQKEVNLMV  120
IHCLTGRMDL QGLPTSDFEL VSKSIDKKIK DIDERLTKLS RNDGGGNVLV APQVASEHDG  180
GGGGGNQEEY VEGMMTDPVA ATARVGDEWM TMMDQRVITG GRDVGESSSN AEALFISNSM  240
SAGNSSDPFF GWDF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKQMYIANESARKATFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022316
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100223160.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-33AGAMOUS-like 80